Variant report

Variant	rs34100493
Chromosome Location	chr3:55892809-55892810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13069069	0.81[EUR][1000 genomes]
rs13098621	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34224277	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34989245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55888800-55893200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:55888800-55893400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:55889000-55893200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:55889000-55894000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:55889200-55894600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:55890200-55893000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:55890400-55893800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:55891600-55893400	Enhancers	Fetal Heart	heart
9	chr3:55891800-55895400	Enhancers	Fetal Lung	lung
10	chr3:55891800-55895400	Enhancers	Fetal Stomach	stomach
11	chr3:55891800-55896400	Enhancers	Brain Germinal Matrix	brain
12	chr3:55892400-55893200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:55892400-55894200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:55892400-55895000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:55892600-55893600	Enhancers	Ovary	ovary
16	chr3:55892600-55894800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:55892600-55895400	Enhancers	Brain Cingulate Gyrus	brain
18	chr3:55892600-55895400	Enhancers	Fetal Kidney	kidney
19	chr3:55892600-55896000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr3:55892800-55893000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:55892800-55894000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:55892800-55894600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr3:55892800-55894600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:55892800-55894600	Enhancers	Brain Hippocampus Middle	brain
25	chr3:55892800-55894800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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