Variant report

Variant	rs13100471
Chromosome Location	chr3:140663931-140663932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140661553..140667904-chr3:140669879..140673651,7	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1109284	1.00[CEU][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13099216	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34267131	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34434275	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34605552	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34677627	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35633570	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6785188	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7616174	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7620524	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7628400	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7638025	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs878117	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9917645	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591865	chr3:140396022-140728850	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1005522	chr3:140454632-140685915	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv536732	chr3:140454632-140685915	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv521218	chr3:140643038-140665147	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3364537	chr3:140646303-140668571	ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv1793115	chr3:140663107-140693053	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140659600-140664600	Active TSS	GM12878-XiMat	blood
2	chr3:140660000-140664000	Active TSS	Right Atrium	heart
3	chr3:140660200-140664000	Active TSS	Right Ventricle	heart
4	chr3:140661800-140664000	Weak transcription	Spleen	Spleen
5	chr3:140661800-140697200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:140662000-140664000	Weak transcription	Small Intestine	intestine
7	chr3:140662000-140664400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:140662000-140665000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:140662200-140664000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:140662200-140665200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:140662200-140665400	Weak transcription	Gastric	stomach
12	chr3:140662200-140669600	Weak transcription	Pancreas	Pancrea
13	chr3:140662200-140670400	Weak transcription	Lung	lung
14	chr3:140662200-140675400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:140662200-140676800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr3:140662200-140696800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:140662400-140664000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr3:140662400-140664000	Weak transcription	Ovary	ovary
19	chr3:140662400-140664200	Enhancers	Primary B cells from cord blood	blood
20	chr3:140662400-140664200	Enhancers	Adipose Nuclei	Adipose
21	chr3:140662400-140664200	Enhancers	Brain Substantia Nigra	brain
22	chr3:140662400-140665000	Enhancers	Colon Smooth Muscle	Colon
23	chr3:140662400-140666000	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr3:140662400-140666000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr3:140662400-140669600	Weak transcription	Left Ventricle	heart
26	chr3:140662400-140677000	Weak transcription	Fetal Thymus	thymus
27	chr3:140662400-140679000	Weak transcription	Fetal Muscle Leg	muscle
28	chr3:140662400-140692200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr3:140662600-140664000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr3:140662600-140664200	Enhancers	Rectal Smooth Muscle	rectum
31	chr3:140662600-140664200	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr3:140662600-140664200	Enhancers	Osteobl	bone
33	chr3:140662600-140665200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr3:140662600-140665600	Enhancers	Fetal Heart	heart
35	chr3:140662600-140667600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr3:140662600-140672400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:140662600-140696800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr3:140662800-140664200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr3:140662800-140664200	Enhancers	NHEK	skin
40	chr3:140662800-140664600	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr3:140662800-140665400	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr3:140662800-140677200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr3:140662800-140679200	Weak transcription	HSMMtube	muscle
44	chr3:140662800-140682200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr3:140662800-140695800	Weak transcription	NHLF	lung
46	chr3:140663000-140664000	Weak transcription	Fetal Intestine Small	intestine
47	chr3:140663000-140664000	Enhancers	A549	lung
48	chr3:140663000-140664200	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr3:140663000-140664200	Enhancers	NHDF-Ad	bronchial
50	chr3:140663000-140664400	Enhancers	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links