Variant report

Variant	rs34434275
Chromosome Location	chr3:140718999-140719000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140717229..140719563-chr3:140823264..140825476,2	MCF-7	breast:
2	chr3:140718651..140719525-chr3:140910863..140911815,6	K562	blood:
3	chr3:140718858..140719528-chr3:140974880..140975512,2	K562	blood:
4	chr3:140717770..140720611-chr3:140820680..140823075,2	MCF-7	breast:
5	chr3:140660153..140662211-chr3:140718084..140720938,2	MCF-7	breast:
6	chr3:140718684..140720140-chr3:140824242..140825601,7	MCF-7	breast:
7	chr3:140717895..140719577-chr3:140910528..140912066,26	MCF-7	breast:
8	chr3:140616885..140617917-chr3:140718709..140719535,4	MCF-7	breast:
9	chr3:140718217..140720012-chr3:140910812..140911779,16	MCF-7	breast:
10	chr3:140718866..140719549-chr3:140824500..140825196,2	MCF-7	breast:
11	chr3:140718492..140720751-chr3:140723112..140725840,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1109284	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13099216	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13100471	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34267131	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34605552	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34677627	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35633570	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6785188	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7616174	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7620524	0.87[EUR][1000 genomes]
rs7628400	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7638025	0.87[EUR][1000 genomes]
rs878117	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9917645	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591865	chr3:140396022-140728850	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140718800-140719800	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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