Variant report

Variant	rs7638025
Chromosome Location	chr3:140669988-140669989
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:140661553..140667904-chr3:140669879..140673651,7	K562	blood:
2	chr3:140667610..140670050-chr3:140670451..140673117,3	K562	blood:
3	chr3:140668911..140671512-chr3:140673930..140676615,2	K562	blood:
4	chr3:140666650..140670047-chr3:140673615..140676647,4	MCF-7	breast:
5	chr3:140667460..140670151-chr3:140670489..140672455,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114120	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1109284	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs13099216	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13100471	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34267131	0.90[EUR][1000 genomes]
rs34434275	0.87[EUR][1000 genomes]
rs34605552	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34677627	0.96[EUR][1000 genomes]
rs35633570	0.87[EUR][1000 genomes]
rs6785188	0.92[EUR][1000 genomes]
rs7616174	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7620524	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7628400	0.89[EUR][1000 genomes]
rs878117	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9917645	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591865	chr3:140396022-140728850	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1005522	chr3:140454632-140685915	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv536732	chr3:140454632-140685915	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv1793115	chr3:140663107-140693053	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140661800-140697200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:140662200-140670400	Weak transcription	Lung	lung
3	chr3:140662200-140675400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:140662200-140676800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:140662200-140696800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:140662400-140677000	Weak transcription	Fetal Thymus	thymus
7	chr3:140662400-140679000	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:140662400-140692200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr3:140662600-140672400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:140662600-140696800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:140662800-140677200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:140662800-140679200	Weak transcription	HSMMtube	muscle
13	chr3:140662800-140682200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr3:140662800-140695800	Weak transcription	NHLF	lung
15	chr3:140663000-140673200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr3:140663000-140681600	Weak transcription	NH-A	brain
17	chr3:140663200-140676400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr3:140663200-140692600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr3:140663200-140696000	Weak transcription	Fetal Stomach	stomach
20	chr3:140663400-140672600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:140663400-140697400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr3:140663600-140671200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr3:140663600-140671800	Weak transcription	Hela-S3	cervix
24	chr3:140663600-140679200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr3:140663600-140692600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr3:140663800-140672800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr3:140664000-140672400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:140664000-140674600	Weak transcription	Right Atrium	heart
29	chr3:140664000-140676600	Weak transcription	Primary T cells from cord blood	blood
30	chr3:140664000-140679000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr3:140664200-140671000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:140664200-140671200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:140664200-140671400	Weak transcription	NHDF-Ad	bronchial
34	chr3:140664200-140671600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:140664200-140671600	Weak transcription	Osteobl	bone
36	chr3:140664200-140671800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr3:140664200-140676000	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr3:140664200-140679000	Weak transcription	Primary B cells from cord blood	blood
39	chr3:140664200-140692400	Weak transcription	Fetal Brain Female	brain
40	chr3:140664200-140703800	Weak transcription	Aorta	Aorta
41	chr3:140664400-140671800	Weak transcription	HMEC	breast
42	chr3:140664400-140672800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr3:140664400-140679000	Weak transcription	Primary hematopoietic stem cells	blood
44	chr3:140664600-140671200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr3:140664600-140671600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr3:140664600-140672000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr3:140664600-140672000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr3:140664600-140672200	Weak transcription	HSMM	muscle
49	chr3:140664600-140677000	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr3:140664600-140677200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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