Variant report

Variant	rs13100711
Chromosome Location	chr3:141082990-141082991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141068265..141070192-chr3:141080636..141083512,2	MCF-7	breast:
2	chr3:141078586..141083082-chr3:141083147..141089245,7	K562	blood:
3	chr3:141078561..141083432-chr3:141083715..141088682,12	MCF-7	breast:
4	chr3:141078321..141083296-chr3:141083518..141088899,11	MCF-7	breast:
5	chr3:141082960..141085877-chr3:141090535..141093207,3	K562	blood:
6	chr3:141082975..141085693-chr3:141086471..141089334,2	K562	blood:
7	chr3:141080682..141083394-chr3:141205249..141207411,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177311	Chromatin interaction
ENSG00000155903	Chromatin interaction
ENSG00000249417	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13065569	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13095453	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34169305	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6781636	0.82[EUR][1000 genomes]
rs726838	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9857275	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141065800-141085200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:141077600-141085400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:141080000-141085000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:141080200-141086800	Weak transcription	Fetal Thymus	thymus
5	chr3:141080400-141084800	Weak transcription	Brain Angular Gyrus	brain
6	chr3:141080400-141084800	Weak transcription	Brain Substantia Nigra	brain
7	chr3:141080400-141084800	Weak transcription	Fetal Heart	heart
8	chr3:141080400-141084800	Weak transcription	Fetal Lung	lung
9	chr3:141080400-141084800	Weak transcription	HSMMtube	muscle
10	chr3:141080400-141085000	Weak transcription	Brain Anterior Caudate	brain
11	chr3:141080400-141085000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr3:141080400-141085200	Weak transcription	Pancreas	Pancrea
13	chr3:141080400-141085400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:141080400-141085400	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:141080400-141085400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:141080400-141085800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr3:141080600-141084000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:141080600-141084200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:141080600-141084200	Weak transcription	Placenta	Placenta
20	chr3:141080600-141084200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr3:141080600-141084800	Weak transcription	Colonic Mucosa	Colon
22	chr3:141080600-141084800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr3:141080600-141084800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr3:141080600-141085000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr3:141080600-141085200	Weak transcription	Small Intestine	intestine
26	chr3:141080600-141085400	Weak transcription	Aorta	Aorta
27	chr3:141080600-141085400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr3:141080600-141085400	Weak transcription	Ovary	ovary
29	chr3:141080600-141085400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr3:141080600-141086200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr3:141080800-141083600	Weak transcription	Fetal Intestine Small	intestine
32	chr3:141080800-141083600	Weak transcription	HMEC	breast
33	chr3:141080800-141083600	Weak transcription	K562	blood
34	chr3:141080800-141083600	Weak transcription	NHDF-Ad	bronchial
35	chr3:141080800-141083800	Weak transcription	Hela-S3	cervix
36	chr3:141080800-141084200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:141080800-141084200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:141080800-141084200	Weak transcription	NH-A	brain
39	chr3:141080800-141085000	Weak transcription	Colon Smooth Muscle	Colon
40	chr3:141080800-141085200	Weak transcription	Fetal Kidney	kidney
41	chr3:141080800-141086400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr3:141081400-141084000	Weak transcription	NHLF	lung
43	chr3:141081400-141084800	Weak transcription	HSMM	muscle
44	chr3:141081600-141085800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr3:141081800-141083800	Weak transcription	Fetal Intestine Large	intestine
46	chr3:141081800-141084200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr3:141081800-141084200	Weak transcription	Osteobl	bone
48	chr3:141082000-141084000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr3:141082000-141084000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr3:141082000-141084600	Weak transcription	HUVEC	blood vessel

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