Variant report

Variant	rs726838
Chromosome Location	chr3:141072666-141072667
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141070925..141073328-chr3:141073494..141076643,3	MCF-7	breast:
2	chr3:141030231..141032232-chr3:141071228..141072763,2	K562	blood:
3	chr3:141069302..141073893-chr3:141077867..141081931,7	K562	blood:
4	chr3:141071211..141074969-chr3:141075130..141079679,8	K562	blood:
5	chr3:141069422..141074358-chr3:141084298..141087585,4	MCF-7	breast:
6	chr3:141030231..141032200-chr3:141070469..141074049,3	K562	blood:
7	chr3:141061634..141065985-chr3:141070093..141073235,4	K562	blood:
8	chr3:141071983..141074032-chr3:141086697..141088829,2	K562	blood:
9	chr3:141068348..141070727-chr3:141071037..141073144,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13065569	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13066993	0.93[CEU][hapmap]
rs13091182	0.92[CEU][hapmap]
rs13095453	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13099193	0.93[CEU][hapmap]
rs13100711	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2011092	0.93[CEU][hapmap]
rs34169305	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6767899	0.92[CEU][hapmap]
rs6781636	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs6785073	0.92[CEU][hapmap]
rs6789653	0.93[CEU][hapmap]
rs9821337	0.93[CEU][hapmap]
rs9822195	0.92[CEU][hapmap]
rs9857275	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv460871	chr3:141027614-141074962	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv591893	chr3:141027614-141074962	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141056400-141079400	Weak transcription	A549	lung
2	chr3:141064600-141080400	Weak transcription	Colonic Mucosa	Colon
3	chr3:141065800-141085200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:141066400-141079600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:141066600-141079200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr3:141066800-141079000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:141067800-141079400	Weak transcription	NHLF	lung
8	chr3:141070200-141075600	Genic enhancers	Fetal Intestine Small	intestine
9	chr3:141070600-141079000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:141071400-141073400	Genic enhancers	Fetal Intestine Large	intestine
11	chr3:141071800-141073800	Enhancers	NHEK	skin
12	chr3:141071800-141075400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:141072000-141073800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:141072400-141072800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:141072400-141072800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:141072400-141073600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:141072400-141073600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:141072600-141073800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr3:141072600-141075200	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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