Variant report

Variant	rs13091182
Chromosome Location	chr3:141133960-141133961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141127732..141130108-chr3:141132601..141134481,2	MCF-7	breast:
2	chr3:141050917..141052882-chr3:141133782..141136338,2	K562	blood:
3	chr3:141125595..141129103-chr3:141133581..141136725,3	K562	blood:
4	chr3:141133473..141135516-chr3:141154520..141157285,2	K562	blood:
5	chr3:141085385..141089817-chr3:141128434..141134875,8	K562	blood:
6	chr3:141133198..141135160-chr3:141173942..141176696,2	MCF-7	breast:
7	chr3:141118092..141121599-chr3:141132205..141135279,4	MCF-7	breast:
8	chr3:141114505..141117008-chr3:141133562..141135723,2	K562	blood:
9	chr3:141133859..141137101-chr3:141144302..141145927,3	MCF-7	breast:
10	chr3:141029410..141031621-chr3:141132926..141134468,2	K562	blood:
11	chr3:141119704..141122794-chr3:141132983..141135901,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000249417	Chromatin interaction
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12695735	0.88[YRI][hapmap]
rs13066993	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13067032	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13068065	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13069734	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13095453	0.92[CEU][hapmap]
rs13099193	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2011092	1.00[CEU][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35225290	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6767786	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6767899	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6785073	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6789653	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6807935	0.89[EUR][1000 genomes]
rs726838	0.92[CEU][hapmap]
rs9821337	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9822195	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9822327	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9857275	0.92[CEU][hapmap]
rs9858603	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141126800-141138000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:141131200-141139200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:141131400-141134200	Enhancers	Primary T cells from cord blood	blood
4	chr3:141131600-141134200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:141131600-141134400	Genic enhancers	Rectal Mucosa Donor 31	rectum
6	chr3:141131600-141138800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:141131600-141144400	Strong transcription	Fetal Intestine Large	intestine
8	chr3:141131600-141145200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr3:141131800-141134000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
10	chr3:141131800-141134800	Genic enhancers	Osteobl	bone
11	chr3:141131800-141135600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:141131800-141136200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:141131800-141136200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr3:141131800-141136200	Genic enhancers	Lung	lung
15	chr3:141131800-141144600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:141131800-141161200	Weak transcription	Thymus	Thymus
17	chr3:141132000-141134600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:141132000-141137400	Genic enhancers	Left Ventricle	heart
19	chr3:141132200-141134000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:141132200-141134000	Genic enhancers	GM12878-XiMat	blood
21	chr3:141132200-141134200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:141132200-141134200	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr3:141132200-141134200	Genic enhancers	Muscle Satellite Cultured Cells	--
24	chr3:141132200-141134200	Weak transcription	Ovary	ovary
25	chr3:141132200-141134400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr3:141132200-141134400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr3:141132200-141134400	Genic enhancers	NH-A	brain
28	chr3:141132200-141135000	Genic enhancers	Brain Hippocampus Middle	brain
29	chr3:141132200-141135400	Genic enhancers	Hela-S3	cervix
30	chr3:141132200-141135400	Genic enhancers	HUVEC	blood vessel
31	chr3:141132200-141135600	Enhancers	Right Atrium	heart
32	chr3:141132200-141135800	Genic enhancers	Duodenum Mucosa	Duodenum
33	chr3:141132200-141135800	Genic enhancers	NHLF	lung
34	chr3:141132200-141136400	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr3:141132200-141138000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:141132200-141138600	Strong transcription	Primary B cells from peripheral blood	blood
37	chr3:141132200-141141000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr3:141132200-141144400	Strong transcription	Fetal Intestine Small	intestine
39	chr3:141132200-141144800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:141132200-141171000	Weak transcription	Primary B cells from cord blood	blood
41	chr3:141132400-141134200	Genic enhancers	HepG2	liver
42	chr3:141132400-141134600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr3:141132400-141134600	Strong transcription	Brain Germinal Matrix	brain
44	chr3:141132400-141134600	Genic enhancers	Colon Smooth Muscle	Colon
45	chr3:141132400-141135600	Strong transcription	Colonic Mucosa	Colon
46	chr3:141132400-141135800	Genic enhancers	Brain Anterior Caudate	brain
47	chr3:141132400-141135800	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr3:141132400-141136200	Genic enhancers	NHDF-Ad	bronchial
49	chr3:141132400-141137600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr3:141132400-141139000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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