Variant report

Variant	rs13069734
Chromosome Location	chr3:141148419-141148420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:141148175-141148821	A549	lung:	n/a	n/a
2	POLR2A	chr3:141148105-141148839	U87	brain:	n/a	n/a
3	MAX	chr3:141148146-141148596	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr3:141148215-141148666	U87	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141140674..141142249-chr3:141146703..141148561,2	MCF-7	breast:

Variant related genes	Relation type
ZBTB38	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13066993	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13067032	0.93[EUR][1000 genomes]
rs13068065	0.93[EUR][1000 genomes]
rs13091182	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13099193	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2011092	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35225290	0.97[EUR][1000 genomes]
rs6767786	0.94[EUR][1000 genomes]
rs6767899	0.96[EUR][1000 genomes]
rs6785073	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6789653	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6807935	0.87[EUR][1000 genomes]
rs9821337	0.93[EUR][1000 genomes]
rs9822195	0.93[EUR][1000 genomes]
rs9822327	0.93[EUR][1000 genomes]
rs9858603	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141131800-141161200	Weak transcription	Thymus	Thymus
2	chr3:141132200-141171000	Weak transcription	Primary B cells from cord blood	blood
3	chr3:141133800-141158400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:141133800-141158400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:141134000-141161600	Weak transcription	Fetal Brain Male	brain
6	chr3:141134200-141161600	Weak transcription	Primary T cells from cord blood	blood
7	chr3:141135600-141160200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr3:141138000-141152000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:141140800-141159200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:141141400-141154800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:141143000-141150800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:141143400-141151600	Enhancers	Fetal Heart	heart
13	chr3:141144800-141149800	Genic enhancers	NHLF	lung
14	chr3:141145000-141149600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr3:141145000-141154800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:141145000-141160000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr3:141145200-141150400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr3:141145200-141151200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:141145400-141152600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr3:141145400-141161200	Weak transcription	Fetal Brain Female	brain
21	chr3:141145400-141161800	Weak transcription	Esophagus	oesophagus
22	chr3:141145600-141148800	Strong transcription	Primary B cells from peripheral blood	blood
23	chr3:141145600-141151200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:141145600-141151800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr3:141145800-141149600	Genic enhancers	Left Ventricle	heart
26	chr3:141145800-141150000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:141145800-141151400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:141145800-141155800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr3:141145800-141161600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr3:141146000-141149800	Genic enhancers	Fetal Stomach	stomach
31	chr3:141146000-141150200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr3:141146000-141150400	Weak transcription	K562	blood
33	chr3:141146000-141151200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr3:141146000-141151800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr3:141146000-141160000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr3:141146000-141160000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr3:141146000-141160000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr3:141146200-141148800	Strong transcription	NHEK	skin
39	chr3:141146200-141149800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr3:141146200-141160000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr3:141146400-141149600	Genic enhancers	Brain Hippocampus Middle	brain
42	chr3:141146400-141149800	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr3:141146400-141150400	Strong transcription	Fetal Intestine Small	intestine
44	chr3:141146400-141150600	Weak transcription	Fetal Kidney	kidney
45	chr3:141146400-141151400	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr3:141146400-141153000	Weak transcription	Small Intestine	intestine
47	chr3:141146400-141155000	Weak transcription	Colonic Mucosa	Colon
48	chr3:141146600-141148600	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr3:141146600-141149400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr3:141146600-141149800	Strong transcription	HMEC	breast

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