Variant report

Variant	rs6807935
Chromosome Location	chr3:141114293-141114294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141095358..141096873-chr3:141112739..141114866,2	K562	blood:
2	chr3:141105114..141109400-chr3:141110714..141114330,6	K562	blood:
3	chr3:141110442..141112822-chr3:141113181..141115807,2	MCF-7	breast:
4	chr3:141063827..141066519-chr3:141112443..141114926,2	K562	blood:
5	chr3:141114089..141115848-chr3:141123999..141126481,2	K562	blood:
6	chr3:141110512..141116314-chr3:141119698..141124103,10	MCF-7	breast:
7	chr3:141089481..141091157-chr3:141111854..141114623,2	K562	blood:
8	chr3:141111002..141115062-chr3:141118587..141124023,6	MCF-7	breast:
9	chr3:141113620..141116005-chr3:141118061..141119671,2	MCF-7	breast:
10	chr3:141102597..141106298-chr3:141113408..141116630,4	MCF-7	breast:
11	chr3:141112658..141115494-chr3:141157644..141160084,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13066993	0.90[EUR][1000 genomes]
rs13067032	0.89[EUR][1000 genomes]
rs13068065	0.89[EUR][1000 genomes]
rs13069734	0.87[EUR][1000 genomes]
rs13091182	0.89[EUR][1000 genomes]
rs13099193	0.90[EUR][1000 genomes]
rs2011092	0.90[EUR][1000 genomes]
rs35225290	0.89[EUR][1000 genomes]
rs6767786	0.90[EUR][1000 genomes]
rs6767899	0.90[EUR][1000 genomes]
rs6785073	0.89[EUR][1000 genomes]
rs6789653	0.85[EUR][1000 genomes]
rs9821337	0.89[EUR][1000 genomes]
rs9822195	0.89[EUR][1000 genomes]
rs9822327	0.89[EUR][1000 genomes]
rs9858603	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141089200-141115800	Weak transcription	Psoas Muscle	Psoas
2	chr3:141098600-141115200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:141106000-141115400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:141106000-141115800	Weak transcription	Right Ventricle	heart
5	chr3:141106000-141117000	Strong transcription	Fetal Intestine Large	intestine
6	chr3:141106000-141119000	Weak transcription	Colonic Mucosa	Colon
7	chr3:141106800-141114800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr3:141106800-141119200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:141108000-141115200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr3:141108000-141116000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:141108200-141115200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:141108400-141114600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr3:141108400-141115400	Weak transcription	Liver	Liver
14	chr3:141108400-141118200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr3:141108400-141118600	Weak transcription	Small Intestine	intestine
16	chr3:141108800-141114800	Weak transcription	HUVEC	blood vessel
17	chr3:141110400-141118000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr3:141111400-141114800	Weak transcription	Aorta	Aorta
19	chr3:141111600-141118000	Weak transcription	Pancreas	Pancrea
20	chr3:141111600-141120800	Weak transcription	Gastric	stomach
21	chr3:141111800-141114800	Weak transcription	Fetal Brain Female	brain
22	chr3:141112000-141114600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr3:141112000-141116600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr3:141112000-141119000	Weak transcription	Fetal Heart	heart
25	chr3:141112400-141114800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:141112400-141115200	Weak transcription	Adipose Nuclei	Adipose
27	chr3:141112400-141115200	Weak transcription	Fetal Brain Male	brain
28	chr3:141112400-141115400	Weak transcription	HMEC	breast
29	chr3:141112400-141116600	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr3:141112400-141117000	Strong transcription	A549	lung
31	chr3:141112400-141120000	Weak transcription	Brain Germinal Matrix	brain
32	chr3:141112600-141114600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:141112600-141114800	Weak transcription	NHDF-Ad	bronchial
34	chr3:141112600-141115000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr3:141112600-141115400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr3:141112600-141116000	Weak transcription	HepG2	liver
37	chr3:141112600-141116800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr3:141112600-141120400	Weak transcription	Fetal Stomach	stomach
39	chr3:141112600-141120600	Weak transcription	Lung	lung
40	chr3:141112800-141114800	Weak transcription	Fetal Kidney	kidney
41	chr3:141112800-141115000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr3:141112800-141115000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr3:141112800-141115200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr3:141112800-141115200	Weak transcription	Brain Anterior Caudate	brain
45	chr3:141112800-141115200	Weak transcription	Left Ventricle	heart
46	chr3:141112800-141115400	Weak transcription	Brain Substantia Nigra	brain
47	chr3:141112800-141115400	Weak transcription	Ovary	ovary
48	chr3:141112800-141115600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr3:141112800-141115800	Weak transcription	Brain Angular Gyrus	brain
50	chr3:141112800-141116000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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