Variant report

Variant	rs9822327
Chromosome Location	chr3:141096755-141096756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141094856..141097031-chr3:141119809..141122251,2	MCF-7	breast:
2	chr3:141091576..141094274-chr3:141094633..141096791,2	K562	blood:
3	chr3:141083461..141090540-chr3:141091667..141099186,10	MCF-7	breast:
4	chr3:141091576..141094274-chr3:141094633..141097047,3	K562	blood:
5	chr3:141094353..141097160-chr3:141097220..141100154,2	K562	blood:
6	chr3:141092073..141094472-chr3:141095647..141097319,2	MCF-7	breast:
7	chr3:141086830..141090672-chr3:141094388..141099553,7	K562	blood:
8	chr3:141085458..141090258-chr3:141094745..141101789,10	MCF-7	breast:
9	chr3:141095358..141096873-chr3:141112739..141114866,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000249417	Chromatin interaction
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13066993	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13067032	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13068065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13069734	0.93[EUR][1000 genomes]
rs13091182	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13099193	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2011092	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35225290	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6767786	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6767899	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6785073	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6789653	0.92[EUR][1000 genomes]
rs6807935	0.89[EUR][1000 genomes]
rs9821337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9822195	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9858603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141087000-141107800	Weak transcription	Pancreas	Pancrea
2	chr3:141088000-141102400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:141088000-141105200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr3:141088200-141101800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:141088200-141102400	Weak transcription	Fetal Kidney	kidney
6	chr3:141088400-141102400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:141088400-141107600	Weak transcription	Small Intestine	intestine
8	chr3:141089200-141097600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr3:141089200-141097600	Weak transcription	Adipose Nuclei	Adipose
10	chr3:141089200-141098800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:141089200-141099000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:141089200-141101800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:141089200-141101800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr3:141089200-141104800	Strong transcription	Fetal Intestine Large	intestine
15	chr3:141089200-141115800	Weak transcription	Psoas Muscle	Psoas
16	chr3:141089400-141102200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr3:141089400-141104200	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:141089600-141099000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:141089600-141102400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:141089600-141102400	Weak transcription	Fetal Brain Male	brain
21	chr3:141089600-141102400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr3:141089600-141105600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr3:141089800-141097600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:141089800-141097800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr3:141089800-141099200	Weak transcription	Brain Anterior Caudate	brain
26	chr3:141089800-141099800	Weak transcription	Brain Angular Gyrus	brain
27	chr3:141089800-141102600	Strong transcription	Fetal Intestine Small	intestine
28	chr3:141091000-141107200	Weak transcription	Liver	Liver
29	chr3:141092000-141099000	Weak transcription	Brain Substantia Nigra	brain
30	chr3:141092000-141105600	Weak transcription	Gastric	stomach
31	chr3:141092200-141102400	Strong transcription	HSMM	muscle
32	chr3:141092400-141099600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr3:141092400-141099800	Weak transcription	Right Atrium	heart
34	chr3:141092600-141098400	Strong transcription	HepG2	liver
35	chr3:141092800-141102400	Weak transcription	Hela-S3	cervix
36	chr3:141093200-141101800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr3:141093600-141101600	Weak transcription	NHDF-Ad	bronchial
38	chr3:141093800-141102200	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr3:141094000-141098800	Strong transcription	Duodenum Mucosa	Duodenum
40	chr3:141094000-141101600	Strong transcription	Osteobl	bone
41	chr3:141094000-141101800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr3:141094200-141097800	Strong transcription	K562	blood
43	chr3:141094200-141102400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr3:141094400-141097400	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr3:141094600-141104200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr3:141094800-141097000	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr3:141094800-141097600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr3:141094800-141097800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr3:141094800-141105600	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr3:141094800-141112200	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links