Variant report

Variant	rs6781636
Chromosome Location	chr3:141067584-141067585
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141052611..141055656-chr3:141065180..141068176,3	K562	blood:
2	chr3:141052611..141054382-chr3:141065464..141067942,2	K562	blood:
3	chr3:141065959..141067603-chr3:141068508..141071378,2	MCF-7	breast:
4	chr3:141067117..141068986-chr3:141164822..141166810,2	K562	blood:
5	chr3:141063282..141069453-chr3:141086349..141090634,7	K562	blood:
6	chr3:141049312..141052024-chr3:141065139..141067701,2	K562	blood:

Variant related genes	Relation type
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13065569	0.84[EUR][1000 genomes]
rs13095453	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs13100711	0.82[EUR][1000 genomes]
rs1346408	0.81[AMR][1000 genomes]
rs16851367	0.83[ASN][1000 genomes]
rs2311847	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs34169305	0.84[EUR][1000 genomes]
rs4683603	0.93[ASN][1000 genomes]
rs6440001	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6784404	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs726838	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs9857275	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs9866391	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv460871	chr3:141027614-141074962	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv591893	chr3:141027614-141074962	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141056400-141079400	Weak transcription	A549	lung
2	chr3:141064600-141080400	Weak transcription	Colonic Mucosa	Colon
3	chr3:141065000-141068000	Enhancers	NHDF-Ad	bronchial
4	chr3:141065400-141068000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:141065400-141068400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:141065800-141070800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:141065800-141085200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:141066400-141068000	Genic enhancers	Fetal Intestine Large	intestine
9	chr3:141066400-141079600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr3:141066600-141079200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr3:141066800-141068400	Enhancers	Fetal Intestine Small	intestine
12	chr3:141066800-141068600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr3:141066800-141079000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr3:141067000-141068000	Enhancers	NHEK	skin
15	chr3:141067200-141067600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:141067200-141067800	Enhancers	NHLF	lung
17	chr3:141067200-141068400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr3:141067400-141068000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr3:141067400-141068000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr3:141067400-141068000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:141067400-141068200	Enhancers	Osteobl	bone
22	chr3:141067400-141068600	Enhancers	K562	blood

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