Variant report

Variant	rs4683603
Chromosome Location	chr3:141092050-141092051
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141083461..141090540-chr3:141091667..141099186,10	MCF-7	breast:
2	chr3:141091576..141094274-chr3:141094633..141097047,3	K562	blood:
3	chr3:141091576..141094274-chr3:141094633..141096791,2	K562	blood:
4	chr3:141086015..141089239-chr3:141089534..141093928,5	K562	blood:
5	chr3:141091574..141093729-chr3:141119134..141120872,2	MCF-7	breast:
6	chr3:141082960..141085877-chr3:141090535..141093207,3	K562	blood:
7	chr3:141086149..141088986-chr3:141090712..141092244,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249417	Chromatin interaction
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13098180	0.89[EUR][1000 genomes]
rs1346408	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1863868	0.95[EUR][1000 genomes]
rs6440001	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6781636	0.93[ASN][1000 genomes]
rs6784404	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7613516	0.89[EUR][1000 genomes]
rs9866391	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141085800-141094200	Weak transcription	Spleen	Spleen
2	chr3:141086000-141093600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:141087000-141107800	Weak transcription	Pancreas	Pancrea
4	chr3:141087800-141092600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:141087800-141092800	Weak transcription	Fetal Stomach	stomach
6	chr3:141088000-141092600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:141088000-141102400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:141088000-141105200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:141088200-141094200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:141088200-141094400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:141088200-141095000	Weak transcription	Colonic Mucosa	Colon
12	chr3:141088200-141101800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr3:141088200-141102400	Weak transcription	Fetal Kidney	kidney
14	chr3:141088400-141092400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr3:141088400-141094200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr3:141088400-141102400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr3:141088400-141107600	Weak transcription	Small Intestine	intestine
18	chr3:141088600-141092600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:141088600-141094200	Weak transcription	Ovary	ovary
20	chr3:141088800-141094200	Weak transcription	Right Ventricle	heart
21	chr3:141089000-141094600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr3:141089200-141092600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr3:141089200-141092600	Genic enhancers	HepG2	liver
24	chr3:141089200-141094200	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr3:141089200-141094400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr3:141089200-141094400	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr3:141089200-141094400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr3:141089200-141094600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:141089200-141095000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr3:141089200-141095200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr3:141089200-141096200	Weak transcription	Fetal Lung	lung
32	chr3:141089200-141097600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr3:141089200-141097600	Weak transcription	Adipose Nuclei	Adipose
34	chr3:141089200-141098800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr3:141089200-141099000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr3:141089200-141101800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:141089200-141101800	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr3:141089200-141104800	Strong transcription	Fetal Intestine Large	intestine
39	chr3:141089200-141115800	Weak transcription	Psoas Muscle	Psoas
40	chr3:141089400-141094600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr3:141089400-141102200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr3:141089400-141104200	Weak transcription	Fetal Muscle Leg	muscle
43	chr3:141089600-141092400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr3:141089600-141092800	Weak transcription	NHEK	skin
45	chr3:141089600-141094400	Weak transcription	Primary B cells from peripheral blood	blood
46	chr3:141089600-141094800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr3:141089600-141096000	Genic enhancers	A549	lung
48	chr3:141089600-141099000	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr3:141089600-141102400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr3:141089600-141102400	Weak transcription	Fetal Brain Male	brain

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