Variant report

Variant	rs9866391
Chromosome Location	chr3:141076084-141076085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141070925..141073328-chr3:141073494..141076643,3	MCF-7	breast:
2	chr3:141075490..141079205-chr3:141079286..141082614,3	K562	blood:
3	chr3:141065346..141067226-chr3:141073466..141076149,2	K562	blood:
4	chr3:141071211..141074969-chr3:141075130..141079679,8	K562	blood:
5	chr3:141074675..141076936-chr3:141087556..141089144,2	K562	blood:
6	chr3:141075968..141078479-chr3:141083365..141086953,3	K562	blood:
7	chr3:141074101..141082527-chr3:141083011..141090165,19	K562	blood:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13098180	0.90[EUR][1000 genomes]
rs1346408	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16851367	0.83[ASN][1000 genomes]
rs1863868	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs2311847	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs4683603	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6440001	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6781636	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6784404	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795398	0.83[YRI][hapmap]
rs7613516	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs7624084	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141056400-141079400	Weak transcription	A549	lung
2	chr3:141064600-141080400	Weak transcription	Colonic Mucosa	Colon
3	chr3:141065800-141085200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:141066400-141079600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:141066600-141079200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr3:141066800-141079000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:141067800-141079400	Weak transcription	NHLF	lung
8	chr3:141070600-141079000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:141073400-141078200	Strong transcription	Fetal Intestine Large	intestine
10	chr3:141073600-141079000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:141074600-141079600	Weak transcription	Placenta	Placenta
12	chr3:141075200-141077000	Weak transcription	K562	blood
13	chr3:141075200-141078200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:141075200-141079400	Weak transcription	HUVEC	blood vessel
15	chr3:141075400-141079400	Weak transcription	HepG2	liver
16	chr3:141075400-141079600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:141075600-141078200	Strong transcription	Fetal Intestine Small	intestine
18	chr3:141075600-141079000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links