Variant report

Variant	rs13101940
Chromosome Location	chr4:22237602-22237603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10938882	0.88[EUR][1000 genomes]
rs11727867	0.91[EUR][1000 genomes]
rs11943936	0.95[EUR][1000 genomes]
rs34354465	0.88[EUR][1000 genomes]
rs34862873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35104245	0.89[EUR][1000 genomes]
rs4466029	0.81[ASN][1000 genomes]
rs4572861	0.81[EUR][1000 genomes]
rs60980377	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61345374	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67083449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6823087	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73243022	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv829881	chr4:22084704-22254679	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv593822	chr4:22165174-22246276	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv997783	chr4:22223503-22338543	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22235200-22239600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr4:22235400-22238800	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:22235400-22239200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:22235400-22239600	Weak transcription	Brain Angular Gyrus	brain
5	chr4:22235400-22239600	Weak transcription	Brain Substantia Nigra	brain
6	chr4:22236800-22238200	Enhancers	Fetal Brain Male	brain
7	chr4:22237000-22237800	Enhancers	Fetal Brain Female	brain
8	chr4:22237000-22238000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:22237000-22238000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:22237200-22238200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr4:22237400-22237800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr4:22237400-22237800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr4:22237600-22238000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr4:22237600-22239600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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