Variant report

Variant	rs73243022
Chromosome Location	chr4:22239258-22239259
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13101940	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34862873	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4466029	0.85[ASN][1000 genomes]
rs60980377	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61345374	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67083449	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6823087	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv829881	chr4:22084704-22254679	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv593822	chr4:22165174-22246276	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv997783	chr4:22223503-22338543	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22235200-22239600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr4:22235400-22239600	Weak transcription	Brain Angular Gyrus	brain
3	chr4:22235400-22239600	Weak transcription	Brain Substantia Nigra	brain
4	chr4:22237600-22239600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:22237800-22239400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:22238200-22239600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr4:22238400-22239800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:22238800-22239400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:22238800-22240000	Active TSS	Rectal Mucosa Donor 31	rectum
10	chr4:22238800-22240400	Enhancers	Brain Hippocampus Middle	brain
11	chr4:22239000-22239400	Flanking Active TSS	Fetal Intestine Large	intestine
12	chr4:22239000-22239600	Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr4:22239000-22239600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
14	chr4:22239000-22239600	Active TSS	Liver	Liver
15	chr4:22239000-22240200	Active TSS	Duodenum Mucosa	Duodenum
16	chr4:22239000-22240200	Active TSS	Fetal Intestine Small	intestine
17	chr4:22239000-22240400	Active TSS	Colonic Mucosa	Colon
18	chr4:22239000-22240800	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr4:22239200-22239400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:22239200-22239600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
21	chr4:22239200-22239600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:22239200-22239800	Active TSS	Primary T helper cells fromperipheralblood	blood
23	chr4:22239200-22240000	Active TSS	Primary T cells fromperipheralblood	blood
24	chr4:22239200-22240000	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr4:22239200-22240200	Active TSS	Primary hematopoietic stem cells	blood
26	chr4:22239200-22240200	Active TSS	Ovary	ovary
27	chr4:22239200-22240200	Active TSS	Stomach Mucosa	stomach

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