Variant report

Variant	rs13106258
Chromosome Location	chr4:160366403-160366404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160218071..160218685-chr4:160365915..160366452,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11938200	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11938339	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11947461	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12502480	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12650516	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17038234	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2699020	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2699034	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2699041	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707687	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851789	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851802	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34911877	0.83[EUR][1000 genomes]
rs3856995	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4691565	0.84[ASN][1000 genomes]
rs56230319	0.82[EUR][1000 genomes]
rs56373036	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57160013	0.81[AMR][1000 genomes]
rs62337590	0.81[EUR][1000 genomes]
rs62337591	0.83[EUR][1000 genomes]
rs6536422	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6536423	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6536424	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6536425	0.81[AMR][1000 genomes]
rs6536426	0.81[EUR][1000 genomes]
rs6829943	0.82[EUR][1000 genomes]
rs6847372	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855985	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7681192	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9714625	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160350600-160367800	Weak transcription	HSMM	muscle
2	chr4:160357600-160367000	Weak transcription	NH-A	brain
3	chr4:160362800-160366800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr4:160364200-160368000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:160364400-160367600	Weak transcription	NHEK	skin
6	chr4:160364600-160367400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:160364800-160368000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:160365600-160366800	Weak transcription	Fetal Lung	lung
9	chr4:160365600-160367000	Weak transcription	NHLF	lung
10	chr4:160365800-160367000	Weak transcription	Fetal Stomach	stomach
11	chr4:160366200-160367200	Weak transcription	Left Ventricle	heart
12	chr4:160366200-160367600	Weak transcription	NHDF-Ad	bronchial
13	chr4:160366200-160367800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:160366200-160367800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:160366200-160367800	Weak transcription	Osteobl	bone
16	chr4:160366400-160367600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:160366400-160367800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:160366400-160367800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:160366400-160367800	Weak transcription	HMEC	breast

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