Variant report

Variant	rs34911877
Chromosome Location	chr4:160365071-160365072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160362877..160365543-chr4:160372401..160374638,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11938200	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11938339	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11947461	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12502480	0.80[EUR][1000 genomes]
rs12650516	0.83[EUR][1000 genomes]
rs13106258	0.83[EUR][1000 genomes]
rs17038234	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2699020	0.82[EUR][1000 genomes]
rs2699034	0.83[EUR][1000 genomes]
rs2699041	0.83[EUR][1000 genomes]
rs2707687	0.83[EUR][1000 genomes]
rs2851789	0.83[EUR][1000 genomes]
rs2851802	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3856995	0.83[EUR][1000 genomes]
rs56230319	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56344662	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56373036	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57160013	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62337590	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62337591	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62337625	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62337626	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6536422	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6536423	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6536424	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6536425	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6536426	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6829943	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6847372	0.83[EUR][1000 genomes]
rs6855985	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7681192	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9714625	0.83[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160350600-160367800	Weak transcription	HSMM	muscle
2	chr4:160357600-160367000	Weak transcription	NH-A	brain
3	chr4:160362800-160365800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:160362800-160366800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:160363800-160365600	Enhancers	NHLF	lung
6	chr4:160364200-160368000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:160364400-160365400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:160364400-160365800	Weak transcription	HMEC	breast
9	chr4:160364400-160367600	Weak transcription	NHEK	skin
10	chr4:160364600-160367400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:160364800-160368000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:160365000-160365600	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links