Variant report

Variant	rs2851789
Chromosome Location	chr4:160375432-160375433
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11938200	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11938339	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11947461	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12502480	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12650516	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13106258	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17038234	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2699020	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2699034	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2699041	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707687	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851802	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34911877	0.83[EUR][1000 genomes]
rs3856995	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4691565	0.84[ASN][1000 genomes]
rs56230319	0.82[EUR][1000 genomes]
rs56373036	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57160013	0.82[AMR][1000 genomes]
rs62337590	0.81[EUR][1000 genomes]
rs62337591	0.83[EUR][1000 genomes]
rs6536422	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6536423	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6536424	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6536425	0.82[AMR][1000 genomes]
rs6536426	0.81[EUR][1000 genomes]
rs6829943	0.82[EUR][1000 genomes]
rs6847372	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855985	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7681192	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9714625	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028244	chr4:160370159-160395135	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1024453	chr4:160373221-160395135	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv523255	chr4:160374255-160388504	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160368200-160376600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:160368400-160390200	Weak transcription	NHEK	skin
3	chr4:160373800-160386200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:160374600-160376600	Weak transcription	NHDF-Ad	bronchial
5	chr4:160374800-160377800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:160375000-160377000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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