Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:47378164..47380614-chr4:47492887..47494813,2	K562	blood:

Variant related genes	Relation type
ENSG00000242431	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10517184	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes]
rs10517185	0.82[CHB][hapmap]
rs10938482	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs11733050	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs12331254	0.86[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes]
rs17461863	0.85[CEU][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs17600442	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs17600511	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs17653449	0.91[CHB][hapmap]
rs28502282	0.86[EUR][1000 genomes]
rs28681526	0.88[EUR][1000 genomes]
rs34236483	0.85[EUR][1000 genomes]
rs4475120	0.87[EUR][1000 genomes]
rs4694846	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs4695220	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs4695223	0.88[EUR][1000 genomes]
rs4695226	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs58150060	0.88[EUR][1000 genomes]
rs6447550	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs6830892	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs7677890	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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