Variant report

Variant	rs17461863
Chromosome Location	chr4:47367164-47367165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10517184	0.87[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10517185	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs10938482	0.87[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11733050	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11945405	0.86[JPT][hapmap]
rs12331254	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13107066	0.85[CEU][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs16860160	0.86[CHB][hapmap]
rs17600442	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17600511	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17653449	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs28502282	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28681526	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34236483	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4336201	0.86[JPT][hapmap]
rs4440195	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4475120	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4694846	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4695220	0.87[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4695223	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4695226	1.00[JPT][hapmap]
rs58150060	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58877228	0.95[ASN][1000 genomes]
rs6447550	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6814130	0.86[JPT][hapmap]
rs6830892	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6848790	0.84[CEU][hapmap]
rs7439087	0.86[JPT][hapmap]
rs7677890	0.87[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47367000-47368000	Enhancers	Brain Germinal Matrix	brain

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