Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10517184	0.86[JPT][hapmap]
rs10517185	0.86[JPT][hapmap]
rs10938482	0.86[JPT][hapmap]
rs11733050	0.86[JPT][hapmap]
rs11945405	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap]
rs12331254	0.86[JPT][hapmap]
rs17461863	0.86[JPT][hapmap]
rs17600442	0.85[JPT][hapmap]
rs17600511	0.86[JPT][hapmap]
rs17600596	0.88[JPT][hapmap]
rs17600651	0.88[JPT][hapmap]
rs17653449	0.82[JPT][hapmap]
rs17653516	0.88[JPT][hapmap]
rs3822113	0.89[CHB][hapmap]
rs4289418	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4336201	0.90[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4694846	0.86[JPT][hapmap]
rs4695220	0.86[JPT][hapmap]
rs4695226	0.86[JPT][hapmap]
rs6290	0.88[JPT][hapmap]
rs6814130	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6817416	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6830892	0.86[JPT][hapmap]
rs7677890	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7439087	CORIN	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: