Variant report
| Variant | rs17653516 |
|---|---|
| Chromosome Location | chr4:47386581-47386582 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs11945405 | 0.88[JPT][hapmap] |
| rs17600596 | 0.85[CEU][hapmap] |
| rs17600651 | 0.85[CEU][hapmap] |
| rs4336201 | 0.88[JPT][hapmap] |
| rs55657029 | 0.81[AMR][1000 genomes] |
| rs6290 | 0.82[CEU][hapmap] |
| rs6814130 | 0.88[JPT][hapmap] |
| rs7439087 | 0.88[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv998919 | chr4:47207023-47476876 | Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
