Variant report

Variant	rs6290
Chromosome Location	chr4:47408838-47408839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11945405	0.88[JPT][hapmap]
rs17600596	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs17600651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17653516	0.82[CEU][hapmap]
rs3822113	0.88[CHB][hapmap];1.00[CHD][hapmap]
rs4289418	0.88[JPT][hapmap]
rs4336201	0.88[JPT][hapmap]
rs55657029	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60107979	0.81[ASN][1000 genomes]
rs6814130	0.88[JPT][hapmap]
rs6817416	0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs7439087	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879005	chr4:47408838-47548254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47404000-47439000	Weak transcription	Brain Anterior Caudate	brain
2	chr4:47404600-47411800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:47407200-47410400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:47407800-47411000	Weak transcription	Aorta	Aorta
5	chr4:47408600-47409000	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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