Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10517184	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10517185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10938482	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11733050	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11945405	0.85[JPT][hapmap]
rs12331254	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13107066	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs16860160	1.00[CHB][hapmap]
rs17461863	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17600511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17653449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28502282	0.92[ASN][1000 genomes]
rs28681526	0.89[ASN][1000 genomes]
rs34236483	0.90[ASN][1000 genomes]
rs4336201	0.85[JPT][hapmap]
rs4440195	0.82[ASN][1000 genomes]
rs4475120	0.87[ASN][1000 genomes]
rs4694846	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4695220	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4695223	0.90[ASN][1000 genomes]
rs4695226	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs58150060	0.89[ASN][1000 genomes]
rs58877228	0.90[ASN][1000 genomes]
rs6447550	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6814130	0.85[JPT][hapmap]
rs6830892	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7439087	0.85[JPT][hapmap]
rs7677890	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47361800-47362400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:47361800-47362600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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