Variant report

Variant	rs58877228
Chromosome Location	chr4:47373503-47373504
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10517184	0.92[ASN][1000 genomes]
rs11733050	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12331254	1.00[ASN][1000 genomes]
rs17461863	0.95[ASN][1000 genomes]
rs17600442	0.90[ASN][1000 genomes]
rs17600511	0.92[ASN][1000 genomes]
rs28502282	0.95[ASN][1000 genomes]
rs28681526	0.98[ASN][1000 genomes]
rs34236483	1.00[ASN][1000 genomes]
rs4440195	0.92[ASN][1000 genomes]
rs4475120	0.97[ASN][1000 genomes]
rs4695223	1.00[ASN][1000 genomes]
rs58150060	0.98[ASN][1000 genomes]
rs7677890	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47370600-47374800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr4:47370600-47374800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:47371000-47374800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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