Variant report

Variant	rs13110939
Chromosome Location	chr4:81230528-81230529
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:81229942..81232616-chr4:81234704..81236401,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1458033	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1458039	0.82[EUR][1000 genomes]
rs1458045	0.85[EUR][1000 genomes]
rs1841011	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1841012	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3899052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6811219	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6822305	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs728956	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs747125	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7678815	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7688097	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7698854	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs968376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs983387	0.96[ASN][1000 genomes]
rs983388	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9993841	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81224800-81232200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:81226200-81231400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:81226200-81231400	Enhancers	NHLF	lung
4	chr4:81227600-81230600	Enhancers	NHDF-Ad	bronchial
5	chr4:81227800-81231000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:81228400-81231000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:81229400-81230600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr4:81229400-81231400	Enhancers	HSMM	muscle
9	chr4:81229400-81232000	Enhancers	HMEC	breast
10	chr4:81229600-81230600	Weak transcription	HSMMtube	muscle
11	chr4:81229600-81230800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:81229600-81231400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:81229800-81230600	Enhancers	NH-A	brain
14	chr4:81229800-81231000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:81229800-81231400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr4:81229800-81231400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:81229800-81231600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:81229800-81231800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr4:81230000-81231000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr4:81230000-81231800	Enhancers	NHEK	skin
21	chr4:81230200-81230600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr4:81230400-81230600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:81230400-81230800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:81230400-81230800	Flanking Active TSS	Osteobl	bone

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