Variant report

Variant	rs1458045
Chromosome Location	chr4:81254610-81254611
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr4:81254307-81254629	A549	lung:	n/a	chr4:81254471-81254482
2	CEBPB	chr4:81254287-81254679	IMR90	lung:	n/a	chr4:81254471-81254482
3	CEBPB	chr4:81254281-81254667	K562	blood:	n/a	chr4:81254471-81254482

Variant related genes	Relation type
C4orf22	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10031438	0.84[CHB][hapmap]
rs12171340	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13110939	0.85[EUR][1000 genomes]
rs1458026	0.94[CHB][hapmap];0.95[ASN][1000 genomes]
rs1458033	0.84[EUR][1000 genomes]
rs1458039	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1495482	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17004889	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1841011	0.82[EUR][1000 genomes]
rs1841012	0.82[EUR][1000 genomes]
rs2125234	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2125235	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2125240	0.87[EUR][1000 genomes]
rs2867710	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2867735	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3899052	0.85[EUR][1000 genomes]
rs4690155	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67455947	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6811219	0.86[EUR][1000 genomes]
rs6818725	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6822305	0.85[CEU][hapmap];0.81[GIH][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs6836496	0.83[ASN][1000 genomes]
rs72860705	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72860710	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72873882	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs728956	0.81[EUR][1000 genomes]
rs7439958	0.91[ASN][1000 genomes]
rs747125	0.83[EUR][1000 genomes]
rs7677853	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7678815	0.83[EUR][1000 genomes]
rs7688097	0.84[EUR][1000 genomes]
rs7695746	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7698854	0.84[EUR][1000 genomes]
rs897962	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs897963	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs968376	0.85[EUR][1000 genomes]
rs983388	0.86[EUR][1000 genomes]
rs9993841	0.84[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1458045	SCD5	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81252400-81256600	Weak transcription	Fetal Heart	heart
2	chr4:81254400-81256600	Weak transcription	Ovary	ovary
3	chr4:81254600-81254800	Enhancers	Osteobl	bone
4	chr4:81254600-81256400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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