Variant report

Variant	rs1458026
Chromosome Location	chr4:81257907-81257908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79872798..79873957-chr4:81257020..81258033,3	MCF-7	breast:
2	chr4:81104889..81105828-chr4:81257611..81258261,2	MCF-7	breast:
3	chr4:79873164..79873769-chr4:81257744..81258254,2	K562	blood:
4	chr4:81186789..81188540-chr4:81256355..81258275,2	K562	blood:
5	chr4:81257688..81260011-chr4:81261131..81263417,2	K562	blood:

Variant related genes	Relation type
ENSG00000152784	Chromatin interaction
ENSG00000138675	Chromatin interaction

rs_ID	r²[population]
rs10031438	0.84[JPT][hapmap]
rs11929913	0.80[ASN][1000 genomes]
rs11930816	0.80[ASN][1000 genomes]
rs11932267	0.80[ASN][1000 genomes]
rs11944059	0.82[ASN][1000 genomes]
rs12171340	0.98[ASN][1000 genomes]
rs1458039	1.00[ASN][1000 genomes]
rs1458045	0.94[CHB][hapmap];0.95[ASN][1000 genomes]
rs1495482	0.97[ASN][1000 genomes]
rs17004889	0.88[ASN][1000 genomes]
rs17004891	0.81[ASN][1000 genomes]
rs1994982	0.80[ASN][1000 genomes]
rs2125234	0.97[ASN][1000 genomes]
rs2125235	0.97[ASN][1000 genomes]
rs2867710	1.00[ASN][1000 genomes]
rs2867735	0.97[ASN][1000 genomes]
rs57686880	0.80[ASN][1000 genomes]
rs60513752	0.80[ASN][1000 genomes]
rs60554077	0.80[ASN][1000 genomes]
rs67455947	0.97[ASN][1000 genomes]
rs6818725	0.97[ASN][1000 genomes]
rs6836496	0.87[ASN][1000 genomes]
rs72860705	0.97[ASN][1000 genomes]
rs72860710	0.95[ASN][1000 genomes]
rs72860771	0.82[ASN][1000 genomes]
rs72860772	0.82[ASN][1000 genomes]
rs72860781	0.80[ASN][1000 genomes]
rs72873882	0.97[ASN][1000 genomes]
rs7439958	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7677853	0.97[ASN][1000 genomes]
rs7695746	0.98[ASN][1000 genomes]
rs897962	0.98[ASN][1000 genomes]
rs897963	0.98[ASN][1000 genomes]

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81256400-81258200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr4:81256400-81258200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:81256600-81258000	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr4:81256600-81258000	Active TSS	Brain Substantia Nigra	brain
5	chr4:81256600-81258000	Active TSS	Ovary	ovary
6	chr4:81256600-81258000	Active TSS	Right Atrium	heart
7	chr4:81256600-81258000	Active TSS	Right Ventricle	heart
8	chr4:81256800-81258000	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
9	chr4:81257200-81258000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr4:81257200-81258000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:81257200-81258000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr4:81257200-81258000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
13	chr4:81257200-81258000	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
14	chr4:81257200-81258000	Flanking Active TSS	NHDF-Ad	bronchial
15	chr4:81257200-81258000	Flanking Active TSS	Osteobl	bone
16	chr4:81257400-81258000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:81257400-81258000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:81257400-81258000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
19	chr4:81257400-81258000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
20	chr4:81257400-81258000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr4:81257400-81258000	Flanking Bivalent TSS/Enh	Colon Smooth Muscle	Colon
22	chr4:81257400-81258000	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr4:81257400-81258000	Enhancers	Esophagus	oesophagus
24	chr4:81257400-81258000	Bivalent Enhancer	Fetal Muscle Leg	muscle
25	chr4:81257400-81258000	Bivalent Enhancer	Small Intestine	intestine
26	chr4:81257400-81258000	Flanking Active TSS	K562	blood
27	chr4:81257400-81260400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:81257600-81258000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:81257600-81258000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr4:81257600-81258000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr4:81257600-81258000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
32	chr4:81257600-81258000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
33	chr4:81257600-81258000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
34	chr4:81257600-81258000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr4:81257600-81258000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr4:81257600-81258000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr4:81257600-81258000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr4:81257600-81258000	Active TSS	Brain Anterior Caudate	brain
39	chr4:81257600-81258000	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
40	chr4:81257600-81258000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
41	chr4:81257600-81258000	Bivalent Enhancer	Fetal Brain Male	brain
42	chr4:81257600-81258000	Bivalent/Poised TSS	Fetal Brain Female	brain
43	chr4:81257600-81258000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
44	chr4:81257600-81258000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
45	chr4:81257600-81258000	Enhancers	Placenta	Placenta
46	chr4:81257600-81258000	Bivalent Enhancer	Fetal Thymus	thymus
47	chr4:81257600-81258000	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
48	chr4:81257600-81258000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
49	chr4:81257600-81258000	Enhancers	Thymus	Thymus
50	chr4:81257600-81258000	Bivalent Enhancer	HepG2	liver

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