Variant report

Variant	rs7677853
Chromosome Location	chr4:81280936-81280937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10031438	0.81[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap]
rs11929913	0.83[ASN][1000 genomes]
rs11930816	0.83[ASN][1000 genomes]
rs11932267	0.83[ASN][1000 genomes]
rs11944059	0.85[ASN][1000 genomes]
rs12171340	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1458026	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1458039	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1458045	0.80[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1495482	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17004889	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17004891	0.83[ASN][1000 genomes]
rs1994982	0.83[ASN][1000 genomes]
rs2125234	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2125235	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2867710	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2867735	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57686880	0.83[ASN][1000 genomes]
rs60513752	0.83[ASN][1000 genomes]
rs60554077	0.83[ASN][1000 genomes]
rs67455947	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6818725	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822305	0.85[CEU][hapmap];0.85[GIH][hapmap]
rs6836496	0.88[ASN][1000 genomes]
rs72860705	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860710	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72860771	0.85[ASN][1000 genomes]
rs72860772	0.85[ASN][1000 genomes]
rs72860781	0.83[ASN][1000 genomes]
rs72873882	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7439958	0.98[ASN][1000 genomes]
rs7695746	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs897962	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs897963	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs983387	0.80[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7677853	SCD5	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81261800-81281800	Weak transcription	Osteobl	bone
2	chr4:81280000-81281200	Weak transcription	Thymus	Thymus
3	chr4:81280000-81282200	Enhancers	Primary T cells from cord blood	blood
4	chr4:81280600-81281000	Bivalent Enhancer	Dnd41	blood
5	chr4:81280800-81281400	Enhancers	Fetal Heart	heart
6	chr4:81280800-81282200	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links