Variant report

Variant	rs897963
Chromosome Location	chr4:81290326-81290327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10031438	0.84[JPT][hapmap]
rs11099226	0.85[AFR][1000 genomes]
rs11929913	0.82[ASN][1000 genomes]
rs11930816	0.82[ASN][1000 genomes]
rs11932267	0.82[ASN][1000 genomes]
rs11944059	0.84[ASN][1000 genomes]
rs12171340	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1458026	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1458039	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1458045	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1495482	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17004889	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17004891	0.82[ASN][1000 genomes]
rs1994982	0.82[ASN][1000 genomes]
rs2125234	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2125235	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2125240	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2867710	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2867735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4690155	0.85[EUR][1000 genomes]
rs57686880	0.82[ASN][1000 genomes]
rs60513752	0.82[ASN][1000 genomes]
rs60554077	0.82[ASN][1000 genomes]
rs67455947	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6818725	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6822305	0.85[CEU][hapmap];0.85[GIH][hapmap]
rs6836496	0.89[ASN][1000 genomes]
rs72860705	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72860710	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72860771	0.84[ASN][1000 genomes]
rs72860772	0.84[ASN][1000 genomes]
rs72860781	0.82[ASN][1000 genomes]
rs72873882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7439958	0.97[ASN][1000 genomes]
rs7677853	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7695746	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs897962	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs897963	SCD5	cis	parietal	SCAN
rs897963	CDS1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81287600-81291800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:81290000-81291800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:81290200-81291000	Strong transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links