Variant report

Variant	rs17004891
Chromosome Location	chr4:81309422-81309423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10031438	0.95[CHB][hapmap];0.82[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1039054	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11099227	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11099231	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11099233	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11099236	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11099238	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1156872	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11721676	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11723594	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11724838	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11727411	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11729082	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11731757	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11736014	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11736601	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11929913	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11930816	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11932267	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11936436	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11936703	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11938178	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11939741	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11944059	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11946412	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12171340	0.82[ASN][1000 genomes]
rs12501575	0.82[EUR][1000 genomes]
rs13108814	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1390254	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1458026	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs1458039	0.81[ASN][1000 genomes]
rs1458045	0.84[CEU][hapmap];0.88[CHD][hapmap]
rs1495482	0.83[ASN][1000 genomes]
rs17004906	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1994981	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1994982	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2125234	0.83[ASN][1000 genomes]
rs2125235	0.83[ASN][1000 genomes]
rs28463662	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2867710	0.81[ASN][1000 genomes]
rs2867735	0.83[ASN][1000 genomes]
rs4693022	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55912262	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56054570	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56267604	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57025153	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57686880	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60513752	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60554077	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61325136	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67455947	0.83[ASN][1000 genomes]
rs6818725	0.83[ASN][1000 genomes]
rs6821676	0.83[ASN][1000 genomes]
rs6821990	0.82[EUR][1000 genomes]
rs6842892	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72860705	0.83[ASN][1000 genomes]
rs72860710	0.81[ASN][1000 genomes]
rs72860771	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72860772	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72860777	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72860781	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72860789	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72860798	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72862015	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72873882	0.83[ASN][1000 genomes]
rs7439958	0.82[ASN][1000 genomes]
rs7670914	0.83[ASN][1000 genomes]
rs7677853	0.83[ASN][1000 genomes]
rs7695356	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7695746	0.82[ASN][1000 genomes]
rs7699572	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs897962	0.82[ASN][1000 genomes]
rs897963	0.82[ASN][1000 genomes]
rs9307683	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17004891	SYVN1	trans	cerebellum	SCAN
rs17004891	MRPS18C	cis	parietal	SCAN
rs17004891	SCD5	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81291000-81310200	Weak transcription	Osteobl	bone
2	chr4:81308200-81314800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:81308600-81314600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:81309200-81309600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:81309400-81310000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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