Variant report

Variant	rs11723594
Chromosome Location	chr4:81361434-81361435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10031438	0.80[EUR][1000 genomes]
rs1039054	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11099227	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11099231	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11099233	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11099236	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11099238	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1156872	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11721676	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11724838	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11727411	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11729082	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11731757	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11736014	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11736601	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11929913	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11930816	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11932267	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11933863	0.85[ASN][1000 genomes]
rs11936241	0.83[ASN][1000 genomes]
rs11936436	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11936703	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11938178	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11939741	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11943326	0.81[ASN][1000 genomes]
rs11944059	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11946412	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11947437	0.85[ASN][1000 genomes]
rs12501575	0.82[EUR][1000 genomes]
rs13108814	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13129145	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1390254	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17004891	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17004906	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17004929	0.81[ASN][1000 genomes]
rs17004930	0.81[ASN][1000 genomes]
rs17004931	0.81[ASN][1000 genomes]
rs17004932	0.82[ASN][1000 genomes]
rs1845693	0.81[ASN][1000 genomes]
rs1994981	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1994982	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2047235	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2201531	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28463662	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4370132	0.83[ASN][1000 genomes]
rs55912262	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56054570	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56267604	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57025153	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57650377	0.81[ASN][1000 genomes]
rs57686880	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57871169	0.83[ASN][1000 genomes]
rs60513752	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60554077	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61325136	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6534957	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6821676	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6821990	0.82[EUR][1000 genomes]
rs6842892	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72860771	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72860772	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72860777	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72860781	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72860789	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72860798	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72862015	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72874050	0.81[ASN][1000 genomes]
rs72874056	0.83[ASN][1000 genomes]
rs72874095	0.83[ASN][1000 genomes]
rs7654257	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7670914	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7695356	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7699572	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9307683	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9990885	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81355400-81363400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:81358600-81362200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr4:81358800-81362200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:81359400-81361800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr4:81360200-81361600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:81360400-81361600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:81360400-81361600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:81360400-81361600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:81360400-81361600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:81360400-81361800	Enhancers	Primary T cells fromperipheralblood	blood
11	chr4:81360400-81361800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:81360400-81362000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr4:81360600-81361600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:81360600-81361600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr4:81360600-81361600	Enhancers	Fetal Thymus	thymus
16	chr4:81360600-81361800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr4:81360600-81362000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
18	chr4:81360600-81362200	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr4:81360800-81361600	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr4:81361000-81361600	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr4:81361000-81362400	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr4:81361200-81361600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr4:81361200-81362200	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr4:81361200-81362200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr4:81361400-81361600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood

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