Variant report

Variant	rs17004932
Chromosome Location	chr4:81453453-81453454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1039054	0.82[ASN][1000 genomes]
rs11099233	0.81[ASN][1000 genomes]
rs11099236	0.82[ASN][1000 genomes]
rs11099238	0.82[ASN][1000 genomes]
rs1156872	0.84[ASN][1000 genomes]
rs11721676	0.82[ASN][1000 genomes]
rs11723594	0.82[ASN][1000 genomes]
rs11736601	0.81[ASN][1000 genomes]
rs11931976	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11933863	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11936241	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11936436	0.81[ASN][1000 genomes]
rs11938178	0.81[ASN][1000 genomes]
rs11939398	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11943326	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11946412	0.82[ASN][1000 genomes]
rs11947437	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1390254	0.81[ASN][1000 genomes]
rs1458026	0.89[CHB][hapmap]
rs1458045	0.94[CHB][hapmap]
rs17004906	0.82[ASN][1000 genomes]
rs17004929	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17004930	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17004931	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1845693	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1994981	0.81[ASN][1000 genomes]
rs28463662	0.81[ASN][1000 genomes]
rs4370132	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56054570	0.82[ASN][1000 genomes]
rs56267604	0.82[ASN][1000 genomes]
rs56661575	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56914874	0.85[ASN][1000 genomes]
rs57025153	0.82[ASN][1000 genomes]
rs57503388	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57650377	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs57871169	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58160906	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59433566	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59497228	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59911046	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72862015	0.82[ASN][1000 genomes]
rs72863141	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72863142	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72863149	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72863150	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72863154	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72863166	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72863168	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72874050	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72874056	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72874095	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7686963	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7688180	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7688377	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013945	chr4:81410029-81454166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81451000-81453600	Weak transcription	Fetal Lung	lung
2	chr4:81453200-81454200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:81453200-81454400	Enhancers	Primary B cells from peripheral blood	blood
4	chr4:81453200-81455200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:81453400-81454400	Enhancers	Fetal Kidney	kidney
6	chr4:81453400-81455400	Enhancers	HUES64 Cell Line	embryonic stem cell

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