Variant report

Variant	rs72874050
Chromosome Location	chr4:81420450-81420451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:81418651..81421448-chr4:81433894..81436150,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1039054	0.81[ASN][1000 genomes]
rs11099236	0.81[ASN][1000 genomes]
rs11099238	0.81[ASN][1000 genomes]
rs1156872	0.83[ASN][1000 genomes]
rs11721676	0.81[ASN][1000 genomes]
rs11723594	0.81[ASN][1000 genomes]
rs11931976	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11933863	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11936241	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11939398	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11943326	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11946412	0.81[ASN][1000 genomes]
rs11947437	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1390254	0.81[ASN][1000 genomes]
rs17004906	0.81[ASN][1000 genomes]
rs17004929	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17004930	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17004931	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17004932	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1845693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1994981	0.81[ASN][1000 genomes]
rs4370132	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56054570	0.81[ASN][1000 genomes]
rs56267604	0.81[ASN][1000 genomes]
rs56661575	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56914874	0.84[ASN][1000 genomes]
rs57025153	0.81[ASN][1000 genomes]
rs57503388	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57650377	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs57871169	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58160906	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59433566	0.87[EUR][1000 genomes]
rs59497228	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59911046	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72862015	0.81[ASN][1000 genomes]
rs72863141	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72863142	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72863149	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72863150	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72863154	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72863166	0.87[EUR][1000 genomes]
rs72863168	0.87[EUR][1000 genomes]
rs72874056	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72874095	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7686963	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7688180	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7688377	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013945	chr4:81410029-81454166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81407600-81421800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:81417200-81420600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr4:81417200-81420800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr4:81417600-81428800	Weak transcription	NHDF-Ad	bronchial
5	chr4:81418000-81422600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr4:81418400-81422000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:81419200-81420800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:81419200-81424200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:81419400-81422600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr4:81419600-81421600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr4:81420200-81424200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr4:81420200-81424600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr4:81420400-81424000	Enhancers	Primary T cells from cord blood	blood
14	chr4:81420400-81424000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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