Variant report

Variant	rs57650377
Chromosome Location	chr4:81409925-81409926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1039054	0.81[ASN][1000 genomes]
rs11099236	0.81[ASN][1000 genomes]
rs11099238	0.81[ASN][1000 genomes]
rs11721676	0.81[ASN][1000 genomes]
rs11723594	0.81[ASN][1000 genomes]
rs11931976	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11933863	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11936241	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11943326	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11946412	0.81[ASN][1000 genomes]
rs11947437	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1390254	0.81[ASN][1000 genomes]
rs17004906	0.81[ASN][1000 genomes]
rs17004929	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17004930	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17004931	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17004932	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1845693	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1994981	0.81[ASN][1000 genomes]
rs4370132	0.88[ASN][1000 genomes]
rs56054570	0.81[ASN][1000 genomes]
rs56267604	0.81[ASN][1000 genomes]
rs57025153	0.81[ASN][1000 genomes]
rs57871169	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs59497228	0.85[ASN][1000 genomes]
rs59911046	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs72862015	0.81[ASN][1000 genomes]
rs72874050	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs72874056	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs72874095	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528410	chr4:81402774-81411380	Weak transcription Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81406200-81412600	Weak transcription	Osteobl	bone
2	chr4:81407600-81421800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:81408000-81410800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:81408600-81412000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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