Variant report

Variant	rs17004931
Chromosome Location	chr4:81450459-81450460
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1039054	0.81[ASN][1000 genomes]
rs11099236	0.81[ASN][1000 genomes]
rs11099238	0.81[ASN][1000 genomes]
rs1156872	0.83[ASN][1000 genomes]
rs11721676	0.81[ASN][1000 genomes]
rs11723594	0.81[ASN][1000 genomes]
rs11931976	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11933863	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11936241	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11939398	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11943326	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11946412	0.81[ASN][1000 genomes]
rs11947437	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1390254	0.81[ASN][1000 genomes]
rs17004906	0.81[ASN][1000 genomes]
rs17004929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17004930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17004932	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1845693	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1994981	0.81[ASN][1000 genomes]
rs4370132	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56054570	0.81[ASN][1000 genomes]
rs56267604	0.81[ASN][1000 genomes]
rs56661575	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56914874	0.84[ASN][1000 genomes]
rs57025153	0.81[ASN][1000 genomes]
rs57503388	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57650377	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs57871169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58160906	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59433566	0.93[EUR][1000 genomes]
rs59497228	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59911046	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72862015	0.81[ASN][1000 genomes]
rs72863141	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72863142	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72863149	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72863150	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72863154	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72863166	0.93[EUR][1000 genomes]
rs72863168	0.93[EUR][1000 genomes]
rs72874050	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72874056	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72874095	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7686963	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7688180	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7688377	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013945	chr4:81410029-81454166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81448400-81452800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:81450200-81451000	Enhancers	Fetal Lung	lung

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