Variant report

Variant	rs11939398
Chromosome Location	chr4:81503224-81503225
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11931976	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11933863	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11936241	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11943326	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11947437	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16998198	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17004929	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17004930	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17004931	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17004932	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1845693	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4370132	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56661575	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56914874	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57503388	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57871169	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58160906	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59433566	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59497228	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59911046	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72863141	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72863142	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72863149	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72863150	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72863154	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72863166	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72863168	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72863181	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72874050	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72874056	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72874095	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7686963	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7688180	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7688377	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002776	chr4:81480374-81802614	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv537154	chr4:81480374-81802614	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81501400-81504000	Enhancers	Primary T cells from cord blood	blood
2	chr4:81502200-81503400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr4:81502200-81503800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr4:81502200-81508000	Weak transcription	Fetal Kidney	kidney
5	chr4:81502200-81509000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr4:81503000-81504000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:81503000-81504000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr4:81503000-81504000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:81503200-81504000	Enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links