Variant report

Variant	rs59911046
Chromosome Location	chr4:81462618-81462619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1156872	0.80[ASN][1000 genomes]
rs11931976	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11933863	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11936241	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11939398	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11943326	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11947437	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16998198	0.80[AMR][1000 genomes]
rs17004929	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17004930	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17004931	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17004932	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1845693	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4370132	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56661575	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56914874	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs57503388	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57650377	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs57871169	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58160906	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59433566	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59497228	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72863141	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72863142	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72863149	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72863150	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72863154	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72863166	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72863168	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72863181	0.80[AMR][1000 genomes]
rs72874050	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72874056	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72874095	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7686963	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7688180	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7688377	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81460800-81462800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr4:81460800-81463400	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr4:81461200-81464000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:81461400-81462800	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr4:81461600-81462800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr4:81461600-81462800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:81461600-81462800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr4:81461600-81463200	Enhancers	Primary T cells from cord blood	blood
9	chr4:81461800-81463200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr4:81461800-81465200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr4:81462600-81462800	Enhancers	GM12878-XiMat	blood

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