Variant report

Variant	rs11933863
Chromosome Location	chr4:81411273-81411274
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1039054	0.85[ASN][1000 genomes]
rs11099227	0.81[ASN][1000 genomes]
rs11099231	0.81[ASN][1000 genomes]
rs11099233	0.83[ASN][1000 genomes]
rs11099236	0.85[ASN][1000 genomes]
rs11099238	0.85[ASN][1000 genomes]
rs1156872	0.86[ASN][1000 genomes]
rs11721676	0.85[ASN][1000 genomes]
rs11723594	0.85[ASN][1000 genomes]
rs11724838	0.81[ASN][1000 genomes]
rs11727411	0.81[ASN][1000 genomes]
rs11729082	0.81[ASN][1000 genomes]
rs11736014	0.81[ASN][1000 genomes]
rs11736601	0.83[ASN][1000 genomes]
rs11931976	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11936241	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11936436	0.83[ASN][1000 genomes]
rs11936703	0.81[ASN][1000 genomes]
rs11938178	0.83[ASN][1000 genomes]
rs11939398	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11943326	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11946412	0.85[ASN][1000 genomes]
rs11947437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13108814	0.82[ASN][1000 genomes]
rs13129145	0.80[ASN][1000 genomes]
rs1390254	0.84[ASN][1000 genomes]
rs1458045	0.85[CHB][hapmap]
rs17004906	0.85[ASN][1000 genomes]
rs17004929	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17004930	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17004931	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17004932	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1845693	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1994981	0.84[ASN][1000 genomes]
rs28463662	0.83[ASN][1000 genomes]
rs4370132	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56054570	0.85[ASN][1000 genomes]
rs56267604	0.85[ASN][1000 genomes]
rs56661575	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56914874	0.84[ASN][1000 genomes]
rs57025153	0.85[ASN][1000 genomes]
rs57503388	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57650377	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs57871169	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58160906	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59433566	0.80[EUR][1000 genomes]
rs59497228	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59911046	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72860789	0.81[ASN][1000 genomes]
rs72860798	0.81[ASN][1000 genomes]
rs72862015	0.85[ASN][1000 genomes]
rs72863141	0.83[ASN][1000 genomes]
rs72863142	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72863149	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72863150	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72863154	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72863166	0.80[EUR][1000 genomes]
rs72863168	0.80[EUR][1000 genomes]
rs72874050	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72874056	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72874095	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7686963	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7688180	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7688377	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7695356	0.82[ASN][1000 genomes]
rs9307683	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528410	chr4:81402774-81411380	Weak transcription Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
2	nsv1013945	chr4:81410029-81454166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81406200-81412600	Weak transcription	Osteobl	bone
2	chr4:81407600-81421800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:81408600-81412000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:81410400-81411600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:81410600-81411400	Enhancers	Primary B cells from peripheral blood	blood
6	chr4:81410600-81411600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr4:81410600-81411800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr4:81410600-81411800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr4:81410800-81411400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr4:81411000-81411400	Enhancers	Primary T cells fromperipheralblood	blood
11	chr4:81411000-81411400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr4:81411000-81411400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr4:81411000-81411400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr4:81411000-81411600	Enhancers	Primary T cells from cord blood	blood
15	chr4:81411000-81411600	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr4:81411000-81416600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr4:81411200-81411400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:81411200-81411400	Enhancers	GM12878-XiMat	blood
19	chr4:81411200-81412000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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