Variant report

Variant	rs72874056
Chromosome Location	chr4:81422740-81422741
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1039054	0.83[ASN][1000 genomes]
rs11099233	0.81[ASN][1000 genomes]
rs11099236	0.83[ASN][1000 genomes]
rs11099238	0.83[ASN][1000 genomes]
rs1156872	0.85[ASN][1000 genomes]
rs11721676	0.83[ASN][1000 genomes]
rs11723594	0.83[ASN][1000 genomes]
rs11736601	0.81[ASN][1000 genomes]
rs11931976	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11933863	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11936241	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11936436	0.81[ASN][1000 genomes]
rs11938178	0.81[ASN][1000 genomes]
rs11939398	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11943326	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11946412	0.83[ASN][1000 genomes]
rs11947437	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13108814	0.81[ASN][1000 genomes]
rs1390254	0.82[ASN][1000 genomes]
rs17004906	0.83[ASN][1000 genomes]
rs17004929	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17004930	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17004931	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17004932	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1845693	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1994981	0.82[ASN][1000 genomes]
rs28463662	0.81[ASN][1000 genomes]
rs4370132	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56054570	0.83[ASN][1000 genomes]
rs56267604	0.83[ASN][1000 genomes]
rs56661575	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56914874	0.86[ASN][1000 genomes]
rs57025153	0.83[ASN][1000 genomes]
rs57503388	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57650377	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs57871169	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58160906	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59433566	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59497228	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59911046	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72862015	0.83[ASN][1000 genomes]
rs72863141	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72863142	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72863149	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72863150	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72863154	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72863166	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72863168	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72874050	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72874095	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686963	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7688180	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7688377	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7695356	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013945	chr4:81410029-81454166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3396357	chr4:81421778-81423776	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81417600-81428800	Weak transcription	NHDF-Ad	bronchial
2	chr4:81419200-81424200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:81420200-81424200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr4:81420200-81424600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr4:81420400-81424000	Enhancers	Primary T cells from cord blood	blood
6	chr4:81420400-81424000	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr4:81420800-81424600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:81421200-81423600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr4:81421400-81423600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:81421800-81423600	Enhancers	Osteobl	bone
11	chr4:81422200-81423200	Active TSS	HMEC	breast
12	chr4:81422400-81423400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr4:81422400-81423400	Weak transcription	HSMM	muscle
14	chr4:81422400-81429800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr4:81422600-81423000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr4:81422600-81423000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr4:81422600-81423000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:81422600-81423000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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