Variant report

Variant	rs59497228
Chromosome Location	chr4:81425688-81425689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1156872	0.81[ASN][1000 genomes]
rs11931976	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11933863	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11936241	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11939398	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11943326	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11947437	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17004929	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17004930	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17004931	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17004932	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1845693	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4370132	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56661575	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56914874	0.82[ASN][1000 genomes]
rs57503388	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57650377	0.85[ASN][1000 genomes]
rs57871169	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58160906	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59433566	0.83[EUR][1000 genomes]
rs59911046	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72863141	0.81[ASN][1000 genomes]
rs72863142	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72863149	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72863150	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72863154	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72863166	0.83[EUR][1000 genomes]
rs72863168	0.83[EUR][1000 genomes]
rs72874050	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72874056	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72874095	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7686963	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7688180	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7688377	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013945	chr4:81410029-81454166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3361417	chr4:81424703-81427426	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
3	esv3421803	chr4:81425278-81426876	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81417600-81428800	Weak transcription	NHDF-Ad	bronchial
2	chr4:81422400-81429800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr4:81423200-81428800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:81424000-81429800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr4:81424200-81426600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr4:81424200-81427600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr4:81424200-81429800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr4:81424200-81430200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:81424400-81427800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr4:81424600-81427600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr4:81424600-81427800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr4:81424600-81428200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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