Variant report

Variant	rs4370132
Chromosome Location	chr4:81423929-81423930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1039054	0.83[ASN][1000 genomes]
rs11099233	0.81[ASN][1000 genomes]
rs11099236	0.83[ASN][1000 genomes]
rs11099238	0.83[ASN][1000 genomes]
rs1156872	0.85[ASN][1000 genomes]
rs11721676	0.83[ASN][1000 genomes]
rs11723594	0.83[ASN][1000 genomes]
rs11736601	0.81[ASN][1000 genomes]
rs11931976	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11933863	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11936241	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11936436	0.81[ASN][1000 genomes]
rs11938178	0.81[ASN][1000 genomes]
rs11939398	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11943326	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11946412	0.83[ASN][1000 genomes]
rs11947437	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13108814	0.81[ASN][1000 genomes]
rs1390254	0.82[ASN][1000 genomes]
rs17004906	0.83[ASN][1000 genomes]
rs17004929	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17004930	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17004931	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17004932	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1845693	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1994981	0.82[ASN][1000 genomes]
rs28463662	0.81[ASN][1000 genomes]
rs56054570	0.83[ASN][1000 genomes]
rs56267604	0.83[ASN][1000 genomes]
rs56661575	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56914874	0.86[ASN][1000 genomes]
rs57025153	0.83[ASN][1000 genomes]
rs57503388	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57650377	0.88[ASN][1000 genomes]
rs57871169	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58160906	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59433566	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59497228	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59911046	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72862015	0.83[ASN][1000 genomes]
rs72863141	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72863142	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72863149	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72863150	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72863154	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72863166	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72863168	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72874050	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72874056	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72874095	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686963	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7688180	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7688377	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7695356	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013945	chr4:81410029-81454166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81417600-81428800	Weak transcription	NHDF-Ad	bronchial
2	chr4:81419200-81424200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:81420200-81424200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr4:81420200-81424600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr4:81420400-81424000	Enhancers	Primary T cells from cord blood	blood
6	chr4:81420400-81424000	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr4:81420800-81424600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:81422400-81429800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr4:81423000-81424200	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr4:81423000-81424200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr4:81423000-81424400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr4:81423200-81424000	Enhancers	HMEC	breast
13	chr4:81423200-81428800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr4:81423400-81424200	Enhancers	HSMM	muscle
15	chr4:81423400-81424600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr4:81423800-81424200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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