Variant report

Variant	rs72860777
Chromosome Location	chr4:81314841-81314842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr4:81314463-81314954	SK-N-SH	brain:	n/a	n/a
2	FOS	chr4:81314417-81315024	MCF10A-Er-Src	breast:	n/a	chr4:81314606-81314617 chr4:81314590-81314601
3	FOS	chr4:81314414-81314965	MCF10A-Er-Src	breast:	n/a	chr4:81314606-81314617 chr4:81314590-81314601
4	STAT3	chr4:81314468-81314975	MCF10A-Er-Src	breast:	n/a	n/a
5	FOSL2	chr4:81314373-81314894	SK-N-SH	brain:	n/a	n/a
6	FOS	chr4:81314415-81315077	MCF10A-Er-Src	breast:	n/a	chr4:81314606-81314617 chr4:81314590-81314601
7	CEBPB	chr4:81314464-81314995	IMR90	lung:	n/a	n/a
8	STAT3	chr4:81314462-81315002	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000232327	TF binding region

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10031438	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1039054	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11099227	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11099231	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11099233	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11099236	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11099238	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1156872	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11721676	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11723594	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11724838	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11727411	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11729082	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11731757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11736014	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11736601	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11929913	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11930816	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11932267	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11936436	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11936703	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11938178	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11939741	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11944059	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11946412	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12501575	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13108814	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13129145	0.81[EUR][1000 genomes]
rs1390254	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17004891	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17004906	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1994981	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1994982	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2047235	0.82[EUR][1000 genomes]
rs2201531	0.82[EUR][1000 genomes]
rs28463662	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4693022	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55912262	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56054570	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56267604	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57025153	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57686880	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60513752	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60554077	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61325136	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6534957	0.82[EUR][1000 genomes]
rs6821676	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6821990	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6842892	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72860771	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72860772	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72860781	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72860789	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72860798	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72862015	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7654257	0.81[EUR][1000 genomes]
rs7670914	0.80[ASN][1000 genomes]
rs7695356	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7699572	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9307683	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9990885	0.82[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81314000-81315000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:81314000-81315200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:81314200-81315000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:81314200-81315000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:81314600-81315000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:81314600-81315000	Enhancers	NHDF-Ad	bronchial
7	chr4:81314600-81315000	Enhancers	NHEK	skin
8	chr4:81314600-81315200	Enhancers	HMEC	breast
9	chr4:81314800-81315000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:81314800-81315200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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