Variant report

Variant	rs57686880
Chromosome Location	chr4:81328245-81328246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10031438	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1039054	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11099227	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11099231	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11099233	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11099236	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11099238	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1156872	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11721676	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11723594	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11724838	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11727411	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11729082	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11731757	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11736014	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11736601	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11929913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11930816	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11932267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11936436	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11936703	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11938178	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11939741	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11944059	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11946412	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12171340	0.82[ASN][1000 genomes]
rs12501575	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13108814	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13129145	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1390254	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1458026	0.80[ASN][1000 genomes]
rs1458039	0.80[ASN][1000 genomes]
rs1495482	0.83[ASN][1000 genomes]
rs17004891	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17004906	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1994981	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1994982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2047235	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2125234	0.83[ASN][1000 genomes]
rs2125235	0.83[ASN][1000 genomes]
rs2201531	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28463662	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2867710	0.80[ASN][1000 genomes]
rs2867735	0.83[ASN][1000 genomes]
rs4590015	0.84[ASN][1000 genomes]
rs4693022	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55912262	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56054570	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56267604	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57025153	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60513752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60554077	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61325136	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6534957	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67455947	0.83[ASN][1000 genomes]
rs6818725	0.83[ASN][1000 genomes]
rs6821676	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6821990	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6842892	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72860705	0.83[ASN][1000 genomes]
rs72860710	0.80[ASN][1000 genomes]
rs72860771	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72860772	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72860777	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72860781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860789	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72860798	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72862015	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72873882	0.83[ASN][1000 genomes]
rs7439958	0.81[ASN][1000 genomes]
rs7654257	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7670914	0.89[ASN][1000 genomes]
rs7677853	0.83[ASN][1000 genomes]
rs7695356	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7695746	0.82[ASN][1000 genomes]
rs7699572	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs897962	0.82[ASN][1000 genomes]
rs897963	0.82[ASN][1000 genomes]
rs9307683	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9990885	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81315000-81328600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:81328000-81328800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:81328000-81329400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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