Variant report

Variant	rs747125
Chromosome Location	chr4:81227042-81227043
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13110939	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1458033	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1458039	0.80[EUR][1000 genomes]
rs1458045	0.89[CEU][hapmap];0.85[GIH][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs1841011	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1841012	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3899052	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6811219	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6822305	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs728956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7678815	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7688097	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7698854	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs968376	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs983387	0.92[ASN][1000 genomes]
rs983388	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9993841	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs747125	SCD5	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81222000-81229400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:81224400-81228400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:81224400-81230200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:81224800-81232200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:81225000-81229600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:81225800-81228600	Enhancers	Osteobl	bone
7	chr4:81226200-81227200	Enhancers	NH-A	brain
8	chr4:81226200-81228800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:81226200-81229000	Enhancers	HSMM	muscle
10	chr4:81226200-81231400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:81226200-81231400	Enhancers	NHLF	lung
12	chr4:81226400-81228600	Enhancers	NHEK	skin
13	chr4:81226400-81228800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:81226400-81228800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:81226400-81228800	Enhancers	HMEC	breast
16	chr4:81226400-81230000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:81226800-81227400	Weak transcription	Fetal Heart	heart
18	chr4:81226800-81228600	Weak transcription	HSMMtube	muscle
19	chr4:81226800-81230400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr4:81227000-81227200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr4:81227000-81227200	Enhancers	H9 Cell Line	embryonic stem cell
22	chr4:81227000-81227200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr4:81227000-81227200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:81227000-81227200	Flanking Active TSS	NHDF-Ad	bronchial
25	chr4:81227000-81227400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:81227000-81228000	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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