Variant report

Variant	rs13111616
Chromosome Location	chr4:142415674-142415675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs12152590	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12498901	0.85[JPT][hapmap]
rs12504148	0.85[JPT][hapmap]
rs12507564	0.80[EUR][1000 genomes]
rs12507887	0.80[EUR][1000 genomes]
rs12508590	0.80[EUR][1000 genomes]
rs12510514	0.85[JPT][hapmap]
rs12513220	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13105639	0.80[EUR][1000 genomes]
rs13106515	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13122574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13127492	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13129076	0.80[EUR][1000 genomes]
rs13130612	0.80[EUR][1000 genomes]
rs13131082	0.80[EUR][1000 genomes]
rs13133830	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13142400	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13145587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554477	0.80[EUR][1000 genomes]
rs17007301	0.80[EUR][1000 genomes]
rs17354547	0.80[EUR][1000 genomes]
rs17354568	0.80[EUR][1000 genomes]
rs17362224	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17364630	0.85[JPT][hapmap]
rs17461899	1.00[YRI][hapmap]
rs1879684	0.89[EUR][1000 genomes]
rs1949668	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1949669	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2049181	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2090878	0.80[EUR][1000 genomes]
rs2103007	0.80[EUR][1000 genomes]
rs2139992	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2322181	0.80[EUR][1000 genomes]
rs34124780	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34149126	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34274316	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34422514	0.80[EUR][1000 genomes]
rs34579838	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34865075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34899172	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34962680	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35308689	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35372192	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35720798	0.89[EUR][1000 genomes]
rs35758858	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35969143	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36043894	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs36124988	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4956295	0.80[EUR][1000 genomes]
rs4956301	0.80[EUR][1000 genomes]
rs4956302	0.80[EUR][1000 genomes]
rs4956384	0.80[EUR][1000 genomes]
rs55912825	0.80[EUR][1000 genomes]
rs56051122	0.80[EUR][1000 genomes]
rs62325330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62326618	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62326619	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62327371	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62327372	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62327373	0.80[ASN][1000 genomes]
rs62327375	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62327376	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62327381	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67407219	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6812199	0.81[EUR][1000 genomes]
rs6825913	0.80[EUR][1000 genomes]
rs6831141	0.80[EUR][1000 genomes]
rs6837400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6845550	0.80[EUR][1000 genomes]
rs72728300	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7671408	0.80[EUR][1000 genomes]
rs7692755	0.81[EUR][1000 genomes]
rs957077	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880172	chr4:142355535-142565089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880173	chr4:142355535-142666106	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830094	chr4:142411738-142567788	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv964260	chr4:142413497-142434363	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142411000-142417800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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