Variant report

Variant	rs35758858
Chromosome Location	chr4:142388146-142388147
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12152590	0.83[ASN][1000 genomes]
rs12513220	0.83[ASN][1000 genomes]
rs13106515	0.83[ASN][1000 genomes]
rs13111616	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13122574	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13127492	0.83[ASN][1000 genomes]
rs13133830	0.83[ASN][1000 genomes]
rs13142400	0.80[ASN][1000 genomes]
rs13145587	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17362224	0.83[ASN][1000 genomes]
rs1949668	0.83[ASN][1000 genomes]
rs1949669	0.83[ASN][1000 genomes]
rs2049181	0.83[ASN][1000 genomes]
rs2139992	0.86[ASN][1000 genomes]
rs34124780	0.83[ASN][1000 genomes]
rs34149126	0.83[ASN][1000 genomes]
rs34274316	0.83[ASN][1000 genomes]
rs34579838	0.83[ASN][1000 genomes]
rs34865075	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34899172	0.83[ASN][1000 genomes]
rs34962680	0.80[ASN][1000 genomes]
rs35308689	0.83[ASN][1000 genomes]
rs35372192	0.83[ASN][1000 genomes]
rs35969143	0.83[ASN][1000 genomes]
rs36043894	0.80[ASN][1000 genomes]
rs36124988	0.83[ASN][1000 genomes]
rs62325330	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62326618	0.83[ASN][1000 genomes]
rs62326619	0.83[ASN][1000 genomes]
rs62327371	0.83[ASN][1000 genomes]
rs62327372	0.83[ASN][1000 genomes]
rs62327373	0.80[ASN][1000 genomes]
rs62327375	0.80[ASN][1000 genomes]
rs62327376	0.80[ASN][1000 genomes]
rs62327381	0.80[ASN][1000 genomes]
rs67407219	0.86[ASN][1000 genomes]
rs6837400	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728300	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880172	chr4:142355535-142565089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880173	chr4:142355535-142666106	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142383800-142390000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:142385800-142407600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:142387000-142390200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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