Variant report

Variant	rs62325330
Chromosome Location	chr4:142381246-142381247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12152590	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12501765	0.80[EUR][1000 genomes]
rs12509822	0.80[EUR][1000 genomes]
rs12513220	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13106515	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13111616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13122574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13127492	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13133830	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13142400	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13145587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17362224	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1879684	0.88[EUR][1000 genomes]
rs1949668	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1949669	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2049181	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2139992	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34124780	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34149126	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34274316	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34579838	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34865075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34899172	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34962680	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35308689	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35372192	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35720798	0.88[EUR][1000 genomes]
rs35758858	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35969143	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36043894	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs36124988	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56140725	0.80[EUR][1000 genomes]
rs60008610	0.80[EUR][1000 genomes]
rs62326618	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62326619	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62327371	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62327372	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62327373	0.80[ASN][1000 genomes]
rs62327375	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62327376	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62327381	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67407219	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6837400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728300	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880172	chr4:142355535-142565089	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880173	chr4:142355535-142666106	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142377200-142386200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:142378400-142381400	Enhancers	HMEC	breast
3	chr4:142379600-142382000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:142380200-142383400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:142380800-142383200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr4:142380800-142383400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:142380800-142383400	Weak transcription	NHEK	skin
8	chr4:142381200-142383400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links