Variant report

Variant	rs13114907
Chromosome Location	chr4:87815215-87815216
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:87515391..87517685-chr4:87812251..87815383,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163629	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10029698	0.87[EUR][1000 genomes]
rs10034541	0.82[EUR][1000 genomes]
rs1075989	0.83[EUR][1000 genomes]
rs12186239	0.87[EUR][1000 genomes]
rs13103212	0.83[EUR][1000 genomes]
rs13117826	0.83[EUR][1000 genomes]
rs13131035	0.87[EUR][1000 genomes]
rs13131194	0.85[EUR][1000 genomes]
rs13134746	0.83[EUR][1000 genomes]
rs13143520	0.81[EUR][1000 genomes]
rs13147942	0.83[EUR][1000 genomes]
rs13151671	0.87[EUR][1000 genomes]
rs13151797	0.86[EUR][1000 genomes]
rs13434404	0.82[EUR][1000 genomes]
rs2705623	0.83[EUR][1000 genomes]
rs28407685	0.87[EUR][1000 genomes]
rs28439108	0.83[EUR][1000 genomes]
rs28447475	0.83[EUR][1000 genomes]
rs28457189	0.82[EUR][1000 genomes]
rs28458234	0.82[EUR][1000 genomes]
rs28502831	0.87[EUR][1000 genomes]
rs28594717	0.85[EUR][1000 genomes]
rs28610346	0.87[EUR][1000 genomes]
rs28620528	0.81[EUR][1000 genomes]
rs28629974	0.87[EUR][1000 genomes]
rs28661703	0.89[EUR][1000 genomes]
rs28664715	0.87[EUR][1000 genomes]
rs28706796	0.85[EUR][1000 genomes]
rs28729679	0.83[EUR][1000 genomes]
rs28854225	0.87[EUR][1000 genomes]
rs28886889	0.87[EUR][1000 genomes]
rs34991149	0.82[EUR][1000 genomes]
rs35480728	0.80[EUR][1000 genomes]
rs35667731	0.85[EUR][1000 genomes]
rs36053558	0.83[EUR][1000 genomes]
rs71605686	0.83[EUR][1000 genomes]
rs71605687	0.83[EUR][1000 genomes]
rs71605688	0.87[EUR][1000 genomes]
rs71605691	0.87[EUR][1000 genomes]
rs71605693	0.80[EUR][1000 genomes]
rs7683045	0.83[EUR][1000 genomes]
rs9993812	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1013308	chr4:87769694-87870168	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv508297	chr4:87778783-87868508	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1009937	chr4:87795314-88008345	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87814000-87815600	Weak transcription	Hela-S3	cervix
2	chr4:87814000-87817400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:87814000-87825000	Weak transcription	Right Atrium	heart
4	chr4:87814000-87825200	Weak transcription	Left Ventricle	heart
5	chr4:87814200-87815400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr4:87814200-87815600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:87814200-87817200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr4:87814200-87824800	Weak transcription	Adipose Nuclei	Adipose
9	chr4:87814200-87825000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:87814200-87825200	Weak transcription	Right Ventricle	heart
11	chr4:87814200-87825200	Weak transcription	A549	lung
12	chr4:87814200-87829400	Weak transcription	K562	blood
13	chr4:87814400-87815400	Weak transcription	HUVEC	blood vessel
14	chr4:87814400-87815400	Weak transcription	NH-A	brain
15	chr4:87814400-87815600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:87814400-87815600	Weak transcription	HMEC	breast
17	chr4:87814400-87815600	Weak transcription	NHDF-Ad	bronchial
18	chr4:87814400-87815600	Weak transcription	Osteobl	bone
19	chr4:87814400-87816000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:87814400-87825000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr4:87814400-87825200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:87814400-87825200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr4:87814600-87815600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr4:87814600-87815600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:87814600-87815600	Weak transcription	NHLF	lung
26	chr4:87814600-87815800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:87814600-87816000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr4:87814600-87821600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr4:87814600-87821600	Weak transcription	Placenta	Placenta
30	chr4:87814600-87825200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:87814600-87830000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr4:87814800-87815800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr4:87814800-87818000	Enhancers	NHEK	skin
34	chr4:87815000-87815800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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