Variant report

Variant	rs13122470
Chromosome Location	chr4:127751263-127751264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10446736	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11098895	0.83[ASN][1000 genomes]
rs11724202	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11724587	0.81[EUR][1000 genomes]
rs11724702	0.81[EUR][1000 genomes]
rs11732835	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11734063	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11942125	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12507245	0.80[ASN][1000 genomes]
rs12507438	0.87[ASN][1000 genomes]
rs12642632	0.83[ASN][1000 genomes]
rs12645687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12646282	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12646727	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13104073	0.80[ASN][1000 genomes]
rs13104202	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13105260	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13114288	0.81[EUR][1000 genomes]
rs13114331	0.81[EUR][1000 genomes]
rs13117741	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13121117	0.81[EUR][1000 genomes]
rs13134285	0.80[ASN][1000 genomes]
rs13135503	0.81[EUR][1000 genomes]
rs13141430	0.84[AFR][1000 genomes]
rs13145472	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13147729	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13148797	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13152329	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13152790	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1472702	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1503609	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1503613	0.87[ASN][1000 genomes]
rs1503632	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1503634	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1604721	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1604722	0.81[EUR][1000 genomes]
rs16997928	0.83[ASN][1000 genomes]
rs16997944	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1948826	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2089063	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2102215	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2134642	0.83[ASN][1000 genomes]
rs2174181	0.96[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2202279	0.89[ASN][1000 genomes]
rs2391100	0.83[ASN][1000 genomes]
rs4270599	0.85[AFR][1000 genomes]
rs4365742	0.83[AFR][1000 genomes]
rs4397007	0.81[EUR][1000 genomes]
rs4492022	0.85[AFR][1000 genomes]
rs4599427	0.84[AFR][1000 genomes]
rs4639084	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4833357	0.81[EUR][1000 genomes]
rs4834148	0.81[EUR][1000 genomes]
rs55832124	0.80[ASN][1000 genomes]
rs56807249	0.80[ASN][1000 genomes]
rs60726529	0.81[ASN][1000 genomes]
rs62322186	0.83[ASN][1000 genomes]
rs62322221	0.80[ASN][1000 genomes]
rs6534582	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6821148	0.85[AFR][1000 genomes]
rs6855733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6857787	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72675928	0.80[ASN][1000 genomes]
rs7439947	0.81[EUR][1000 genomes]
rs7665607	0.83[ASN][1000 genomes]
rs7688921	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012833	chr4:127468474-127760933	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv537242	chr4:127468474-127760933	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv524850	chr4:127470903-127768849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879909	chr4:127646765-127792639	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv879912	chr4:127706053-127775563	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3367258	chr4:127749396-127772702	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127716000-127756000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:127751000-127764000	Weak transcription	K562	blood

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